UFO08371.5prime Sequence
1104 bp (1001 high quality bases) assembled on 2011-07-23
> UFO08371.5prime
CAGTCGACATGTGCTGCAGCTGCTGTGGGGTGACCCAACAAAAGGCCTGG
GTCTTCGGCCTGGGAACCTTTTTCGCGGTCTCCGGACTCCTGGCCATAAT
ATGCTGGCCTGGCTTTATAGACTCAGGGATTATGAAGGCCTTGCCGTTGA
CACCCACTTCAAAGACTTTTGAAAAATGGGAGGAGCTGCCCATTCCGGTG
TATGTCTACATGTATCTTTGGAACTGGACAAATGCCGCAGATGTGCAGGC
TAATGGAGTAAAACCTATTTTCGCGCAACTTGGACCCTATGTTTATCGAG
AGGAGAGGAAGAAGATGGATCTTGAGTGGCACGACAATGGCACAGTTACC
TTTAACCCCAGAAGAACTTGGTTCTGGGAAGAGGAGCTCTCTGGCGGCAA
GCAAACGGATTTAATTACCGCCCCACATTTACCTTCATTGGCTGCTTCAA
ACCAAATGCGGAATAGCAACGTCTTCCTGAAATTCATGTTCAACGAGGCC
CTAAATGCGAATGGTGGACATCTCTTTGTGACCCACACGGCAGCTGAATG
GCTGTTCGAAAGTTTCTACGACGAATTTTTGCATTACGCCATGACCCTGA
ATAATCCATTGGTCCCAAAAATCGAGTCGGATCACTTTGCCTGGTTCCTC
AACCGTAACGGATCGAAGGACTTCGAGGGTCCCTTCACTGTACACACCGG
AGTGGGTGACATCAAGGAGATGGGTGAAATTAAGTATTGGAAGGGCCAGA
ATCACACGGGATGGTACGATGGAGAATGTGGACGTCTCAATGGCAGCACC
ACGGATCTTTTTGTGCCCGATGAGCCCAAGGAGAAGCTTTGACCATCTTC
ATTCCGGATACTTGTCGGATCATAATCTTGAGTTCACCGGACAGAGCGAA
ACAATTCAGGGCATCACGGGTTGGAAGTACGAGAAAACGCCGATACCTTC
GACAATGGACAGATCAATGGTTACGCGAAGTGCTTGTGTTCTTTGGAGCG
CCAGCCAAATATTTTTTCCTGCAACCGGAGCACTGACCTAGAACCGGTGT
GCGATGATTCCCATGTTACTTCTTGCGATTCATTTATGTACCGAGAAGTT
ATGC
UFO08371.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ninaD-RB | 1342 | CG31783-RB | 38..1126 | 9..1091 | 4995 | 97.8 | Plus |
| ninaD-RA | 1727 | CG31783-RA | 38..1126 | 9..1091 | 4995 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18082223..18082832 | 440..1046 | 2685 | 97.9 | Plus |
| 2L | 23513712 | 2L | 18081850..18082156 | 135..441 | 1535 | 100 | Plus |
| 2L | 23513712 | 2L | 18081665..18081794 | 9..138 | 650 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:18:36 has no hits.
UFO08371.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:49 Download gff for
UFO08371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RB | 28..1100 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:12 Download gff for
UFO08371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 30..1102 | 1..1069 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:05 Download gff for
UFO08371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ninaD-RA | 30..1102 | 1..1069 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:05 Download gff for
UFO08371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18081657..18081793 | 1..137 | 97 | -> | Plus |
| 2L | 18081853..18082155 | 138..440 | 100 | -> | Plus |
| 2L | 18082224..18082856 | 441..1069 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:12 Download gff for
UFO08371.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18081657..18081793 | 1..137 | 97 | -> | Plus |
| arm_2L | 18081853..18082155 | 138..440 | 100 | -> | Plus |
| arm_2L | 18082224..18082856 | 441..1069 | 97 | | Plus |
