UFO08372.5prime Sequence
1123 bp (1002 high quality bases) assembled on 2011-07-23
> UFO08372.5prime
CAGTCGACATGGATCCGATGATTTGTGATCTGTGGTCTGGCCGCATTTGG
CTATTGATACTCATTTGCCTGTGCGGCTTTCAGCAGTCCCGCTGTTTTTT
TGTTGACTATACAGAGAACACAGAGTTAATTCAACAGAGAGCCGGATTCG
ATGTCAAGCTGCAGTGCAATCTCAAAGGTCTGGTCGATGAGAGTATGCTG
AATGACATCAAGATACATTGGTACTTTAAGCAATGCAGCGAAAACAATTG
CCATCAGTTGGGATCTGTGGACGAGTGGACTGCTCTGCCATGTGAGCCGA
GTCTTTGTCGTCCGGAACTCTGGCTCCGGAATGTGACGGAGCGGTATTCG
GGACTGTACAAATGCAGCATTAATCCGCACATTTGGGATAAAGCCCAGGC
TGTGGATGTTCAACTGGTTCGCACCTATCAGCTGGATGTTAAAAACACCT
CATTGGCAGCCCCTGAGTTTGTGGACTCGTATCCCAACAACAAGACCACA
TTGGTGGGCAGTAGGGTGGTGTTCCAGTGCCGTGTTCACAGCGAGGAGCA
TCCCACAATCAAGTGGTTTCGCCGGCAGACGTACGTGGGAACTCAGTCAG
GTGGCGAAGCCTCCTCGGCACCCACAACCTCAAATTTTAGCAACCATATT
GTCCGGTACAATGGTCGAACATATGAACTACTGTCCACCGATCCAGAAAA
GATGATGGCACCCCAGATATATCTCAGCAAATTGATTCTGGACGGAGTGA
GATTACGAGATGCCGGACACTACGCCTGCGTGGCCATCAGCTATCGAGGC
CATAAGATCCGCGAGGCTTTCCTGGATGTGCTGGCCGATGTGGAGGATAC
GGATCACGAGAATGAGTACTGGTCGGACTACGGTAATGAGATGAGGGAGT
TCCGACTAGCGATCGACGGGAGTTCCTGCTGCTCTTCCTTATGCCACTGG
GATTGGCTCTTCTCCATTGACCGTGTGGCTCAGTATCTGTTGTACAACGT
TGCCTCTGGTGGGACACGCGATTGCCAGCGATAGATTCGGACGAAGATCT
GACACGGAAGGTGTGTCCTCCGGGGACAGCATGCCAGCCTTTCTAGAACA
TTCTTAGCGCGCCAGATATGTCT
UFO08372.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:18:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31431-RC | 1595 | CG31431-RC | 384..1464 | 2..1076 | 5075 | 98.5 | Plus |
| CG31431-RB | 1685 | CG31431-RB | 480..1560 | 2..1076 | 5075 | 98.5 | Plus |
| CG31431-RA | 1585 | CG31431-RA | 374..1454 | 2..1076 | 5075 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:18:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21872872..21873509 | 445..1076 | 2660 | 97.3 | Plus |
| 3R | 32079331 | 3R | 21872582..21872801 | 225..444 | 1085 | 99.5 | Plus |
| 3R | 32079331 | 3R | 21872407..21872525 | 112..230 | 595 | 100 | Plus |
| 3R | 32079331 | 3R | 21872028..21872140 | 2..114 | 535 | 98.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:18:41 has no hits.
UFO08372.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:49 Download gff for
UFO08372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31431-RA | 370..1458 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:14 Download gff for
UFO08372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31431-RA | 373..1461 | 1..1084 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:05 Download gff for
UFO08372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31431-RA | 373..1461 | 1..1084 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:05 Download gff for
UFO08372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21872027..21872140 | 1..114 | 97 | -> | Plus |
| 3R | 21872410..21872525 | 115..230 | 100 | -> | Plus |
| 3R | 21872588..21872801 | 231..444 | 100 | -> | Plus |
| 3R | 21872872..21873516 | 445..1084 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:14 Download gff for
UFO08372.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17698310..17698523 | 231..444 | 100 | -> | Plus |
| arm_3R | 17697749..17697862 | 1..114 | 97 | -> | Plus |
| arm_3R | 17698132..17698247 | 115..230 | 100 | -> | Plus |
| arm_3R | 17698594..17699238 | 445..1084 | 97 | | Plus |
