UFO08374.5prime Sequence
1163 bp (1057 high quality bases) assembled on 2011-07-23
> UFO08374.5prime
CAGTCGACATGTCGATGAGCAATTTATCAATAGACGGCGAGTTCCGCTAC
ATAATTCAGTGGTTCAACGAGTGGAGTGAACTGCAGCGGGATGACTTTGT
CTACGTTTTCGTGGAGTACCTGGCCAGGGGATCCAGTTCTGGCGCCAGCG
ATGGCCAGGTGAATGGATTGGTCAACTCGCTGGCCAACGCAGCAGTGCAG
GACAAGCCCATGAGCCTGTTCCAATGCCGCATTAAGCTGTTCCGTGAATG
GAGCCCCAAGTGGCCGATCGAGTTCAAATGCAAGCTGCAGGAGAAGATCA
GTGAGATCGACGCGAAGGTGGGGGAGAAGATCATCAATGAGCTTCGGGGG
CCCCATTCCGTGCACAATGGCGACGTAGCCGTACATTTAAATGCAAATGG
AGCGAGCGAAGAGGGCGGAGACTCCGAACTGGAGCAGATGCCAGAGTCAG
AAGTGACGGAGGTCGCCACTTTGGCGGCGGGGCAAGAAGCTGATCCAGCT
CCCGAAGCAGATGACAATCGCTTGGCGGCGGTCTTAAGCCAAGAAACGCC
CGTTGATGACGACGACGTGGAAAAGTCTGCCGGTGAAGATTGCAATAGTA
ATGCCGATGTAAATGGCCATTATCCAGCGGCTGCAGTGACAACGATTGCG
GTGAATATATCACCATCGCCATCCCCCACTCCCCAGCCGATTGTTGAACC
TGTAGAACAGGTCGAGAATAGCGTTACAGTCACCGTGGCTTCTCCAGAAG
TTCCCCCCGTGGCTGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCC
CAGGTAAGTGGTCATAATCATAATCATAATCATAATCATAATCACAACTA
GCCTAGGAGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAA
ACGCCCGGCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAG
GTCATTACTGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATT
ACGCCCCGCCCTGCCACTCATCGCAGTACTGTTGTTATTCATTAAGCATT
CTGGCCGACATGAGGCCATCCACAACGGCATGATGGAACCTGGATCGGCA
GGCGCATCAGCACCTGTTGGCCTTGGCCAATATTTGCCATGGTGGAACGG
GGCAAAACTGTTC
UFO08374.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12948-RB | 1519 | CG12948-RB | 476..1231 | 9..764 | 3765 | 99.9 | Plus |
| CG12948-RA | 1281 | CG12948-RA | 238..993 | 9..764 | 3765 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9746455..9746988 | 764..231 | 2670 | 100 | Minus |
| 3R | 32079331 | 3R | 9747048..9747269 | 230..9 | 1095 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:19:28 has no hits.
UFO08374.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:56 Download gff for
UFO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 256..1024 | 1..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:35 Download gff for
UFO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 256..1024 | 1..770 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:28 Download gff for
UFO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12948-RA | 230..998 | 1..770 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:28 Download gff for
UFO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9746450..9746988 | 231..770 | 99 | <- | Minus |
| 3R | 9747048..9747276 | 1..230 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:35 Download gff for
UFO08374.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5572172..5572710 | 231..770 | 99 | <- | Minus |
| arm_3R | 5572770..5572998 | 1..230 | 97 | | Minus |
