UFO08376.5prime Sequence
1106 bp (1000 high quality bases) assembled on 2011-07-23
> UFO08376.5prime
CAGTCGACATGGATTTGTATGACGGCATTGATACGAGGGCTCGATCTAGC
CAGATTGATGGATGGTCTTCGGGAATAAAAATGTTACAGACCCAGCTGGC
AGTAAAAATGGCTGTCAAAAAACCACTTATGACGCCAGTGGTTAATCTAA
GGTCCAAACGCCTTGCAGATCCAGAAGTTACATGTTTTGCTCCAATTACT
ACAGTTGTATCCAAACCATTAATAAGTGGTAAAGCCCTTCCATCCATACT
GGAAAGGATAAACAGGGGGGACTGGGACGTTGCCGATGAATACGATCCTC
AAAGGCCAAATGAATATGAAAAACTTAAAGAGAAAAGTAATGGCAGTGAC
AAAAATCGAGCAGGCGTAAGTGATCGAGAAGACCGAGATGACAAAGAAAA
AGATCGTAAACGTGGACGCGTCGGTCGTCGAGAATTTTATAGAGACGAAG
TCTCAGCCCCTAACCTGAAGCTCAGCGGGTTTGGCCACCGGCAAAACGAT
GATGACATGTACTTGCCATCTCCGGGCCTTGTAGCTAAACAGGGAGGTGC
CACAATCGCTCCCCCTCCTTCCCTCCAAGAAATGTCCATTGATAGTGGTT
GTGAAGCCACTAATACTATGCCATATTCTGCCAGCTCGGTGGCCGCCAAA
ATTATGGCAAAATATGGGTTTAAGGATGGTCAAGGTCTCGGAAAATCGGA
GCAGGGCATGGCCATAGCTCTTCAAGTAGAGAAAACCTCCAAACGTGGTG
GACGGATCATACACGAAAAAGACGTTTTTCTGCCACCCCTAGCATTGTCG
CCACCTTCTATTGGCTCCCAAATAGGAACAAGTCCCAGCCACAAGGCCAT
GCCTCCTCCCCAGATGGTAGACACGGCGGCTGAGAGTGGTGACATCGGAT
ACAGCATTACGGAGATTATGAAATCACCAAGCAAGGTTGTTCTCTACGCA
CATGGTAGACCCGGGGACGTTGACGAGATGACCCGAGTAAAAGACGATGC
AACACAGTACGGGAGTGAACAGTGTTATCATTCACGATCGGTCCGACTGT
GCGAGAATGCAGTAAAATTTCGTAAGTAGCGATCGAAAGGCATATGCGTA
TGGACT
UFO08376.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Spf45-RA | 1397 | CG17540-RA | 71..1156 | 9..1074 | 4920 | 97.8 | Plus |
| Spf45-RC | 1257 | CG17540-RC | 48..1016 | 126..1074 | 4335 | 97.5 | Plus |
| Spf45-RB | 1354 | CG17540-RB | 188..1113 | 169..1074 | 4120 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 23067291..23068144 | 976..126 | 4120 | 99.6 | Minus |
| 2L | 23513712 | 2L | 23068200..23068316 | 125..9 | 585 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:19:38 has no hits.
UFO08376.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:57 Download gff for
UFO08376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 128..1196 | 3..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:40 Download gff for
UFO08376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 67..1135 | 3..1057 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:31 Download gff for
UFO08376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Spf45-RA | 67..1135 | 3..1057 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:31 Download gff for
UFO08376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 23067197..23068144 | 126..1057 | 97 | <- | Minus |
| 2L | 23068200..23068320 | 3..125 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:40 Download gff for
UFO08376.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22959929..22960876 | 126..1057 | 97 | <- | Minus |
| arm_2L | 22960932..22961052 | 3..125 | 97 | | Minus |
