UFO08379.5prime Sequence
1145 bp (1027 high quality bases) assembled on 2011-07-23
> UFO08379.5prime
CAGTCGACATGTCCAAGGATCACTGGATGAGGGATCTGCCAAGCGAGTTG
CGTGACCTGTCGATAATCAATCTGGCTATTCCAGGTTCCCACAATTCGAT
GACTTATGGCATAAATAGCAAGTCCGAACTATCGCCAGATGCGGAAATTT
CGATTAGGCGGTGGCATCGCTTCTTTCCCTGCTTCGTGCGCCGTTGGAGC
AAGACGCAATCTTCTGGAACACTGGATCAACTGGAGCTGGGAGTGCGGTA
CTTTGACCTAAGGATAGCCCAGAAGGATGATAAGTTCTACTACTGTCATG
GCCTTTTTGCCATGGAGATTTTTGAGCCACTTCTGGAGATTCGCCAGTTC
GTGGACACCCATCCAGAGGAGGTGGTAATCCTGGATCTGCAGCACTTTTA
CGCCATGACAGTGGCTCATCACCAGAAGCTGCACAAGGATCTGATCCAGT
TCTTCGCCCATCGTCTGTACTCCACAGTGGATGGTTCACTCAAGGATTGT
ACTCTGAATAGATGCTTGGAAATGCAGCGCAGCGTGGTGATCATCTACAG
GCGATGTCCCATTCCACTGCCGCTGAGATTCTGGCCCAGTTATGCGTGGC
CCACACCGTGGCCCAATAAAGCGAGTGTCAAGAAGCTGCAGTCCTTTCTG
GAGGATTCCCTACTCTCGCGACAGCCCCAACAGGGTTATGTCTCCCAGTG
CCTTATCACGCCCACTGGTCGCTATATCGCCTTCCGGCTCTTCTTCACCC
TGAAGAGCACAGCCAAACGGGTGGACAAGAAGCTGCAGCCTTGGATTCAG
GAACAGATTCCAGGTCCCTTCGAGCCAAAGGACGAGCCAAGGGTAAACGT
GTTCCTGGCCGACTTCGTAAGCCTAAAGGGCGGACAGTTCTGCGATTGGG
TAGTTGATCTGACACAAAACTACTTGAGCAATTGGCTGGCGATAAGGAGC
TGGAGTCCACTGAAGGGGGAAGAAGGAGGAGGCCCAAGTGCAGCTTTCTA
GACATTCGGTTGGCGCCGCGGGCCCAGGTTAGTGGTCATATCATATCATA
TCATATCATATCCCACTAGGCTAGAGAGATCCTGGTCATGAACTATGGCT
GATTCCTCACCAATAAAAGGCTGGCACGAACGTCTGGAACAATCG
UFO08379.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10747-RB | 1600 | CG10747-RB | 220..1202 | 8..988 | 4820 | 99.6 | Plus |
| CG10747-RA | 1529 | CG10747-RA | 149..1131 | 8..988 | 4820 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20090034..20090941 | 988..83 | 4380 | 99.3 | Minus |
| 2L | 23513712 | 2L | 20090996..20091074 | 86..8 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:19:48 has no hits.
UFO08379.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:58 Download gff for
UFO08379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10747-RA | 140..1141 | 1..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:43 Download gff for
UFO08379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10747-RA | 142..1143 | 1..998 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:36 Download gff for
UFO08379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10747-RA | 142..1143 | 1..998 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:36 Download gff for
UFO08379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20090057..20090939 | 85..966 | 99 | <- | Minus |
| 2L | 20090998..20091077 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:43 Download gff for
UFO08379.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20090057..20090939 | 85..966 | 99 | <- | Minus |
| arm_2L | 20090998..20091077 | 1..84 | 95 | | Minus |
