UFO08382.5prime Sequence
1087 bp (968 high quality bases) assembled on 2011-07-23
> UFO08382.5prime
CAGTCGACATGACGGCAGCCGGCTTTAATTCTATCCTCTGCCTGAGGCAG
TTAGTCCGTCTAAACAGGCGCCAGTATTCAGCCCCTGCGAAATCCGTGCT
TTCCGGCTCACAAACAAATGACCAGGCAACGCCACCACCGACATCGAAAT
CCGCGGACAAAATGCGCGGATGGCAGCTGCACAACTACGGCGATATTGAC
GAGCTGCAGCTCTCTGAAATGCTAAAGATACCCCAGATCCGTTGTTCCAA
CGAGTGCCTGGTACGCATCAGGGCGACGGCAGTGAACCCCATCGACCTGG
CCATGCTCCGTGGTTACGGGGCCACAGTGCTGAACAAGATGCGCTGTCAG
CCGGGCGACGGCATCGAGTTTCCGCTTATTTTGGGCCGCGAGTTCTGCGG
TGAGCTGGTGCAGACGGGAATGGGTGTTTCGCTGCCTCTGGGATCGCGAG
TCTGGGGAGTGGTACCCCTACAGGCCACCATTGGCTCGCATGCGGAGTAT
GTAGCCGTTCCTTCATACTGTCTTGCTCCTGCACCCAAAGAACTGGATGA
TTACGAGGCCGCCAGCGTGTTGTATGCCGGATTGACGGCTTGGTCGGGAC
TGTACATAACTGGAGGCCTGGGTGGTCCATGTGGAGCCACAACAGCTTCC
GGTGGAGGTGCCCACAAGCGGGTCCTAGTCCTTGGCGGCTCCGGTGGCGT
TGGCACATTGGCCATACAAATCCTCAAGTCCCAGAAAGTACAAGTTTTGG
CAACCTGCAGCGAAAATGCCATTGAAATGGTTCGCAATTTGGGAGCCGAT
TTAGTGGTCGACTATAACAACCCGCAGCCATGGAGGAGCTGTGCAAATAC
GCACCCTATGACATTGTGCTGGACTGCGCTGGACACGTGGTCAGATGCGG
CGAATCGAGTACGACTTTCGCCAGTACATCACCTTCTCATCTCGTGCTGC
ACATCGACAGCAGGACTGGGAGTAGGGCGCTTAGATTGGTTCGATCTGTT
CCAGAACACGTAGATCGTCACGCAGCGCGGAGCCTGGTCATGGGTTCTTT
AGTCCGCCCCCCAGATCAATTTACGAACATGGAACCG
UFO08382.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17221-RC | 1673 | CG17221-RC | 117..1196 | 9..1064 | 4755 | 97.3 | Plus |
| CG17221-RA | 1409 | CG17221-RA | 117..1196 | 9..1064 | 4755 | 97.3 | Plus |
| CG17221-RB | 1319 | CG17221-RB | 37..1106 | 19..1064 | 4705 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3040228..3040740 | 9..521 | 2565 | 100 | Plus |
| 2L | 23513712 | 2L | 3040792..3041218 | 522..943 | 1855 | 98.4 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:19:19 has no hits.
UFO08382.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:55 Download gff for
UFO08382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17221-RA | 117..1173 | 9..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:32 Download gff for
UFO08382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17221-RA | 117..1173 | 9..1044 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:23 Download gff for
UFO08382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17221-RA | 117..1173 | 9..1044 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:23 Download gff for
UFO08382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3040228..3040740 | 9..521 | 100 | -> | Plus |
| 2L | 3040792..3041335 | 522..1044 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:32 Download gff for
UFO08382.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3040228..3040740 | 9..521 | 100 | -> | Plus |
| arm_2L | 3040792..3041335 | 522..1044 | 95 | | Plus |
