UFO08383.5prime Sequence
1144 bp (1028 high quality bases) assembled on 2011-07-23
> UFO08383.5prime
CAGTCGACATGTCGAAAGTGACGCAAAGTGCTGACAACGGCAGCAACGCC
AACAGCAATGACATCTACAACATTGTCCTGCTGGTGGTTGACATCGTGAT
GCTGATCGTCAAATTCTGGCTCGCCATTGCGGAAGCTATCGTTGGACTTT
TCCGCGCGCCGCCGCTCGATGATGTCAATGGCAAGGTGGTCCTGATCACC
GGCACTGGCCACGGCATGGGCAAGGAGATGGCACTGCAGTACGCCAAGCT
GGGCGCCACCATTCTCTGCTGGGATGTCAATGAGCAGACCAATAACCAGA
CCGTCAAGGAGATCAAGAACAATGGTGGCAAGGCCTTTGGCTACGTTTGC
AATGTGACCAAGCGCGAGGAACTGATCGAACTGGCCCAGAAGGTGCGCAA
GGAGCATGGATTCATTCATGTGGTGGTCAACAATGCCGGCATCATGCCCT
GCCATCCACTGCTGGAGCATACCGAGAACGAGATTCGTCTAATGTACGAG
ATCAATGTGCTCTCTCACTTCTGGATCATCCAGGCGTTCCTGCCCGATAT
GATTGAGCGCAACGAGGGCAGCATTGTGGCCCTATCCTCATGCGCCGGAC
TCTTTGGACTGATCAATCTGGTGCCCTATTGCGGCACCAAGTTCGCCGTT
CGTGGCTACATGGCCGCCCTCGTTGAGGAGCTGCGTCAGAAGAACCCACA
GAACAACGTCAAGCTGACTACCATATATCCGTATATGATCGATACGGGTC
TGTGCAAGAATCCCCGCTACCGATTCCCCAATCTGTTCAAGCTGATACCC
GCCGATGTGGCCGCCGGATCGATCATCGAGGCTCAGCGCCAGGGATTGGA
GGAGGCGGCGATTCCACGACATTTCGTGGCCGCTGAGAGATCGGTCGCCT
GATTCCACGCAAGGCGATGCGATTGGTCAACGATTTCTTCGACACGGGTG
TGGATACCGATAAGTCCGCAAGCTTCTAGACCATTCGGTTTGGCGCGGCG
GGCCCAGGTTAGTGGTCATAATCATAATCATAATCATAATCATAATCCCA
ACTAGCTTAGGAGATCTTGGTTCATGAACTATGCTGAATTCTCACAATAA
ATGCCGGCGCACGAACGTTCTGAACAATCCGAATGGATCCTGGA
UFO08383.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:19:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2254-RA | 1404 | CG2254-RA | 155..1116 | 7..967 | 4785 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8079427..8079924 | 524..27 | 2490 | 100 | Minus |
| X | 23542271 | X | 8078638..8078898 | 967..708 | 1255 | 99.6 | Minus |
| X | 23542271 | X | 8079168..8079353 | 709..524 | 930 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:19:24 has no hits.
UFO08383.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:20:55 Download gff for
UFO08383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2254-RA | 146..1123 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:34 Download gff for
UFO08383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2254-RA | 149..1126 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:25 Download gff for
UFO08383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2254-RA | 149..1126 | 1..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:25 Download gff for
UFO08383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8078628..8078898 | 708..979 | 97 | <- | Minus |
| X | 8079170..8079352 | 525..707 | 100 | <- | Minus |
| X | 8079427..8079922 | 29..524 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:34 Download gff for
UFO08383.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7973203..7973385 | 525..707 | 100 | <- | Minus |
| arm_X | 7973460..7973955 | 29..524 | 100 | <- | Minus |
| arm_X | 7972661..7972931 | 708..979 | 97 | <- | Minus |
