UFO08385.5prime Sequence
1104 bp (961 high quality bases) assembled on 2011-07-23
> UFO08385.5prime
CAGTCGACATGACGGCAACCAAGCAGCAAGAGGCTGAGGCCGAACATGAT
CCCCAAGTGGTGGTCACCCCTGGAGACGCCTCTCGCAGCTCTCGCCAAGA
TCGGGGTCTATGGCGGGATCTTACTTCCTACTGGATCCTCGGTCTGTGCA
ACAACTACGGATACGTGGTGATGCTGAGTGCTGCGCACGATATTATCAAG
CAGTTTAATCCGAATGATGAATCGGAAGAAAGCTCGTCGGGAAGAAACTG
TCACTTGGTTTCAACAGGTGCCATCTTGCTGGCAGACGTGCTGCCCTCAT
TATTTGTCAAGATTCTAATGCCATTCTTTCCATTTTGGGTGAATTTCCGT
ATAGCTCTTGCCGTGGCCTTTTCTGCAGCTGGTTTCCTCCTGGTTGGATT
CGCCAATGCCGAATGGATGGCTCTTTTGGGTGTCATCATCACTTCGGCTA
GCAGCGGAATAGGAGAAACCACTTTCTTGGCCTATTCTTCGCGATACAAT
AAGAATGTGATCTCCACTTGGTCGTCCGGAACTGGTGGCGCTGGAGTTAT
CGGATCCTTGAGCTATGCTAGCTTGAGATCCTTAGACTTCAGTCCCAGAG
ATACTATGCTGATTATGCTGATCTTCCCTGCGATCGAGGCCTTTGCATTC
TGGTTGCTGCTTCGTCGTCCACAAGTTGATATATTGCCGGTTACCACGGT
TGAGTCCACGGAAGTCCTGATCAGCGATGAGAAGCCATTAGTTGGGTTCA
AGGAAAAGCTCTTCTATATCAAGCACCTCTTCAATATATGTTGCCCCTTT
GCCTGGTTTACTTCTTCGAATACTTCATCAATCAAGGATTGTTCGAGCTG
GTTTACTTTGAGATATATTCCCTGGACAGGACTCGCAGTACCGCTGGCTA
ATGTGTACTATCAGATCGGAGTCTTTATCTCGCGCTCTCTGTCATCTTCT
TCCAGCTGGACAGGATCTGGCTGATGGTCATCATCAGTTCGGTCACGTGG
TATACTTCCTCCACGAGGTTATCTGGGGGTTACCAGCCCTAGCATTCTGG
GATCGGGGTTGCCCACCGTCCTGGGTGGGAGGGACTTTGGGCGGGGGCGG
TGCC
UFO08385.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cln3-RB | 1589 | CG5582-RB | 107..1191 | 9..1094 | 4785 | 96.9 | Plus |
| cln3-RA | 1553 | CG5582-RA | 71..1155 | 9..1094 | 4785 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 17809937..17810276 | 841..503 | 1650 | 99.7 | Minus |
| 3L | 28110227 | 3L | 17810786..17810989 | 212..9 | 1020 | 100 | Minus |
| 3L | 28110227 | 3L | 17810335..17810494 | 503..344 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 17810583..17810714 | 343..212 | 660 | 100 | Minus |
| 3L | 28110227 | 3L | 17809687..17809880 | 1030..841 | 470 | 87.6 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:20:18 has no hits.
UFO08385.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:02 Download gff for
UFO08385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 54..1153 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:56 Download gff for
UFO08385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 62..1161 | 1..1104 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:47 Download gff for
UFO08385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cln3-RA | 62..1161 | 1..1104 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:47 Download gff for
UFO08385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 17809937..17810276 | 503..841 | 99 | <- | Minus |
| 3L | 17810336..17810494 | 344..502 | 100 | <- | Minus |
| 3L | 17810583..17810713 | 213..343 | 100 | <- | Minus |
| 3L | 17810786..17810995 | 1..212 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:56 Download gff for
UFO08385.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 17803683..17803813 | 213..343 | 100 | <- | Minus |
| arm_3L | 17803886..17804095 | 1..212 | 98 | | Minus |
| arm_3L | 17803037..17803376 | 503..841 | 99 | <- | Minus |
| arm_3L | 17803436..17803594 | 344..502 | 100 | <- | Minus |
