UFO08388.5prime Sequence
1133 bp (1015 high quality bases) assembled on 2011-07-23
> UFO08388.5prime
CAGTCGACATGTACTTACTGCCGTTCGGAGTTTCAACCCGCCACCAAATC
ACAGAGTGCCTGCAAGAAGTGCGAACATTATCTGGGGAAGTACGGCAAAC
CCAGTGCCTGCGAGTGCTGCAAGATTGTGGCCGCCTTCGGAGGATCCAAG
TGCATGCGGTCAATGGCAAATTGCTTTGCTGGCTGTGTGCCTGCGCCTAC
AAGCGAGCTCTACTCAAGGCACAGCAGGAGGGCCGTATACCGATGTCCAA
GAAGAGGCCACACGAGAAGACCTCGTCCTCGCACAGAGACAGCGCTGCGG
CCAAGAAGCCATCGCGCAACGAGCTGGGCAAGAGCGGCAGCGGTGCCAAT
AATAGCGGCGTGAATGCCGTAAGCGGAGCTGGATTGGATCTACCTGATAA
GATCTCACGCGGAAATGGTGGTAATGGGACCATTGCAGCGCCTGCTGCCA
TCACCGTGGACACCAATTCGTCCGATCATGTGGTTGCTATTACATACCTA
AAAGAACGCATCGCCAGTCTGGAGAAGCGTCTGAATCAAAAAGACAAAGA
GCTGCTCGAAAAAGACAAGCAGCTGACTGAACTGAAGGGCAAAAACTTCG
AGAAGGAGAACGACATGCGCAACCGGCTGAAGGAAGTGGAGCGTCTGCAC
GACATGAAGGTGGACAACTTGAACCGCAAGATCGCCAGTGTGCTCAAGGA
GCTGGCCGTGCTTAAGAAGAGCAGCAACAAAAAGACCGCTGCCATTAGCA
AGGCAGAAAAGGAGATCATCAAACGTGAGAACTTATCGCCCAAGGAGGAA
ATTCTGGCGACAACGGGGCCGGAAAAACCGACCAAGGCCTCGTCGGAGCC
CGCCGATCTGGACAAGACGAAAAGAGTCGCGATCGAGACGAGGAACGCAG
CGAGCAGGGGGATAGGGCCAGTGTGCGGTCACGATCCGCCTCCAGCAGCC
CCACGCCCTCGTCGACGCAAGCTTTCTAGACATTCGTTTGGCGCGCGGGC
CCAGGTAAGTGTCATATCATATCATATTCATATCATTATCACACTAGGCT
AGAGATCTGTCATGAACTGTGCTTGAATCTCACCAAATAAAACGCCGGGC
GCACGACGTCTGACAATCGATGGAGTTCTTGAG
UFO08388.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4452-RE | 1583 | CG4452-RE | 265..1220 | 9..963 | 4665 | 99.3 | Plus |
| CG4452-RA | 1670 | CG4452-RA | 508..1314 | 158..963 | 3920 | 99.1 | Plus |
| CG4452-RA | 1670 | CG4452-RA | 265..414 | 9..158 | 750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9368900..9369314 | 158..572 | 2015 | 99 | Plus |
| 3L | 28110227 | 3L | 9369543..9369937 | 570..963 | 1895 | 99.2 | Plus |
| 3L | 28110227 | 3L | 9368101..9368216 | 45..160 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:28 has no hits.
UFO08388.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:04 Download gff for
UFO08388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4452-RC | 132..1097 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:01 Download gff for
UFO08388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4452-RE | 255..1220 | 1..963 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:50 Download gff for
UFO08388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4452-RE | 255..1220 | 1..963 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:50 Download gff for
UFO08388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9367968..9368013 | 1..44 | 91 | -> | Plus |
| 3L | 9368101..9368214 | 45..158 | 100 | -> | Plus |
| 3L | 9368901..9369314 | 159..572 | 99 | -> | Plus |
| 3L | 9369546..9369937 | 573..963 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:01 Download gff for
UFO08388.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9361068..9361113 | 1..44 | 91 | -> | Plus |
| arm_3L | 9361201..9361314 | 45..158 | 100 | -> | Plus |
| arm_3L | 9362001..9362414 | 159..572 | 99 | -> | Plus |
| arm_3L | 9362646..9363037 | 573..963 | 99 | == | Plus |
