UFO08391.5prime Sequence
1134 bp (1031 high quality bases) assembled on 2011-07-23
> UFO08391.5prime
CAGTCGACATGGAAAGCGAGCGGCTGCGAATCACGCTGGACAGCGCGGAT
CGGGTTTACTTTGCGGGCGACATAATTCGCGGCGAGATCTGGATGAACGT
CAACAAGCGCACCAAAATACGCGCCATCAAGGTGCAGGTCACCGGCAAGG
GAAAATGCAAATGGATGGAGATCCTGCGCAAGAACTCGAACAACAACGAG
TACTCCCGCAGTCTGTTCTACACCAGCAAAGAGGTGTACGAGCATAGCGA
GACGCCTCTGCCGGATTTTGAGCCGCGTGGCCTGGAACTTTCGGCTGGGG
AGCACACGTTCATCTTCGAGGTGGCGCTGGGTCGCCAGCTACCTTCGAGT
TTCAAGGGCAGCTATGGCGCCATCAAGTACAAGATGCGCGTGCTCATCCA
GCGACCATGGACCTTCGACGAGCGCCACACGATTCCTTTCACCGTGGTGA
AGAACATGCCGCTCCAACCGATGCAACGCAGCATACCCAGTTCGCTGGAG
AAGCAGGTGACCAAGACGATCAGTTTGTTTGGCACTAGACCGATCACCCT
GTTGGCCCTTCTGCCCGAAGATTTTGCGGTGCGCGGAGAGCCGCTTAGGA
TTTGCGCTACTGTGATCAACAACAGCACCACCGCTGTGGAGAAGCTGCGC
TTTACCGTCCTGCAGTACGTGACCTACTACAGCCATGTACCACTGCGGGT
GCAGAAGGTGGAGTGCATAGCGGTGGCCACCAAGGAGACGGGCTCGGTGC
AGAAGAAGACCGAGCGGAGTTTTGCGCACGAGCTGCTCCTGCCCGATGGA
GCCCAGCCGACGGATGAACAGATGAGCGGCGTCATCACCATTGTATACGA
GCTGCGTGTGGAGGCGGTGCTGCGGGGATTCTTTAAGAACTTGATCCTTA
ATTTGCCCTTTAAGGTGTACTCGCAGGATCCATCGAATAGGCAGAGTTCG
CTGCGTCCGCCGCCGCCGCCACGGCCTACGATGGACCACCTGGTCCGGAA
TTGGGCCTCCGGGCATCTGTTTGAGCCCGCCCTGCCGTCTTTCCCTCACT
GGACTCTCATGGCTCGCCCTCGCACCTCATCGCAGTAGCGGGGTGGCAGC
TCATTAACTTCGATAACCTGATCCTCGCGGGACC
UFO08391.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Leash-RA | 3180 | CG4674-RA | 434..1547 | 9..1119 | 5230 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10893729..10894664 | 123..1057 | 4490 | 99.4 | Plus |
| 3R | 32079331 | 3R | 10885973..10886087 | 9..123 | 575 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:32 has no hits.
UFO08391.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:05 Download gff for
UFO08391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4674-RA | 420..1517 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:05 Download gff for
UFO08391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4674-RA | 427..1524 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:51 Download gff for
UFO08391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Leash-RA | 427..1524 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:51 Download gff for
UFO08391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10885966..10886087 | 1..123 | 97 | -> | Plus |
| 3R | 10893730..10894705 | 124..1095 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:05 Download gff for
UFO08391.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6711688..6711809 | 1..123 | 97 | -> | Plus |
| arm_3R | 6719452..6720427 | 124..1095 | 98 | | Plus |
