UFO08393.5prime Sequence
1110 bp (988 high quality bases) assembled on 2011-07-23
> UFO08393.5prime
CAGTCGACATGAAGGTGTTCCGACTGCGTCTGGTCAAGCTGCTGCTGCTC
GGATTTCTGCTGGCCAATCTGGTGTTTCTCTATTACACGTGGAACACGCT
GCTCTGGCGGCGGATAAGTAGGGCTCTGTCCGGTGAATCTCAGCCGGCAG
AGGAACCGCCAAAGGCCGCCAAGCTGTCGCCCAAGGAGAAGCTGCGCAAT
GCCAACAAACACATACGCAAGTCCATCACCATCGTGTTCTATGGCCACTA
CAACTTTGAGCAGGATCTGAAGGCATCGATCGACAGCATCCTGGACGTGA
TACCCAACATGCCCATCCTGGTGCTTCAGGATGGCGGTGCCGAGTACGCC
TATCCGCCGGTCAACTACGAACGGAACCTAACCGCCGGCGAGGAGCGCAC
CGTGCTATTCCAGAGTCTGTCCTTCGATGTGCGGCGAACGCGGCAGGAGC
TGAATCCCTTGGCGTCCATTCGGACCAAATACGCTCTCATCATGCCGGAC
GGCGTGCGGCTGAACAGCAAGAACATCCTGCAGAAGATTCTGCGCGAGAT
CAACTCCATGGGCCTGCCGGGTCAGCCCAAGGAGCAGCGACCTCCAGTGC
CGCCGGAGCAGTTGGTGCGACGCATGGTGCTAGTACCCTTCGCCGGCAAT
CTGAAGTCCTTCAGCAGCTGCGTCAAGATGAACCTGGATTTGCCCGACTG
GACACTGGAGCTGGTGGCAACCAACGATACGAGACGATGTGATTTGTTCC
TGCAGAAGCACGCAATCCTGTTGGATGCAGCTGCTCTGGCAGCCATGCCC
GAGCCCTTCTCCCTGCCCTTTCCGGAATGCTCTACATGCAGGCCAAGATA
GCCATCTCTCGACCACGGTGTTCCCGCAAGCCTTTCAAGAGGGACGGCGT
CTATTCGCCTCCTTTCACACCAAACAGCGGAGATGACCTGCGCGTCGGCA
GTTCCGTGAGATGTACAAGAAACTGCAGATCAGCGATCGTGAGAGGCATA
AGAGTGCCAGAAGCTCAGCCCGGGAGGTTTGCGTCAGGTCACGGCTGGTC
CTGGAATGGTCAGTCTCGTCTCGAACCCTCGCCTGCCCTGATCCGACTCG
ATCTGTCGCT
UFO08393.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15651-RA | 2547 | CG15651-RA | 294..1418 | 4..1106 | 4985 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20985465..20986207 | 746..4 | 3700 | 99.9 | Minus |
| 2R | 25286936 | 2R | 20985297..20985406 | 854..746 | 500 | 99.1 | Minus |
| 2R | 25286936 | 2R | 20985108..20985232 | 982..861 | 480 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:20:41 has no hits.
UFO08393.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:06 Download gff for
UFO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 286..1399 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:14:09 Download gff for
UFO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 291..1404 | 1..1097 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:54 Download gff for
UFO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15651-RA | 291..1404 | 1..1097 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:54 Download gff for
UFO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20985289..20985405 | 747..861 | 98 | <- | Minus |
| 2R | 20985465..20986210 | 1..746 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:14:09 Download gff for
UFO08393.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16872794..16872910 | 747..861 | 98 | <- | Minus |
| arm_2R | 16872970..16873715 | 1..746 | 99 | | Minus |
