UFO08394.5prime Sequence
1093 bp (922 high quality bases) assembled on 2011-07-23
> UFO08394.5prime
CAGTCGACATGGACAACGCAAGCTCAACTTTTGGCCAGTCGGACTTCGAC
TGGGACGCCATCAACGTGGGTGACTACCAGTTGGATCACTCCCAGAACTT
TTTCGCACGGGCCAACAAGGAGAACAACAGGAGCCTCAGCAATGTTAACC
CCCTCCTGCTGTGCACCACTCCGCAGAAGATCGGCCGGGAACAGCGCGAT
GGTGACTTCGATGGCAAGCTGATTAGTGCTGGGGATCTCAAGAAGGAGTC
CCCCAAAGACACGACAGAGGCGTCCAAGGATGCACTCACTATCAAGCCCA
AAGTTGAGCCCCACGATGTGCCAGAACTCAAGTTGAAAACAGAGCTCCAG
GAGCTGGCTCAAGTGTCCCCACTTGACAACGGCCCAGAGCCGCAGGACGA
CATCAAACAAATTGTTCCGCTCAACTGGGGCAAGGATGGGGACGATGATG
AGAAGCACATGACGGAGGCCGATCAGCACTTGGTCCACCAGGAACGTCCT
CCCGGCGTCGGGGCCAAGCTCCGCCTGGAGTGGTCACCCCCACGCCACCG
CGAGCACGAGGGAGCCGGCGCCTCTGCCACATCCGCCGCCCCCAAGGCAT
ACCAGTTCAAGGACGTGTACGAGAGCAAAGCGGCAGCAGGCGATGCGCAA
GCGCTCCCGAGGAGGAAAGCAAGGCGCGCCAGTTCCACAGCCGACCCATG
CCCAACTTTAAGGCCATGCACAAGCGCATGAACGAGCTGGCAGTCATCCA
CAAAATCACCGTCCCGCGCACGCCCGAGACGCTCAAGCACAGCCCAGTCG
AACGTGGAGCGGCGTCGCGACGACGATCCGGGCCGACCAGGCGCGACTGC
ATCCGGCTGGTACCCGCTTCAGACTCCTTCCACCTGCGCAGCGAGCAGCG
CGTGCGCGACCGACGCCGAGTTCGACGCCCTCGTGCAGGTCAGCCCTGAG
CAGAAGAAAATGGAGGTATAGACTTAATTCTAAGTAGCCTGGCAGCTTTC
TTGACCATTCGTTTGGGCCGCGGGGCCCAGGGTAATGTGTCCATATTCAT
ATCCATAATTCATTATTCATTAATCACCAACTTAGCTATAGGG
UFO08394.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mei-38-RA | 1333 | CG14781-RA | 129..1102 | 8..989 | 4575 | 98.3 | Plus |
| mei-38-RB | 1336 | CG14781-RB | 129..1105 | 8..989 | 4535 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1477375..1478242 | 105..978 | 3935 | 98.3 | Plus |
| X | 23542271 | X | 1477191..1477288 | 8..105 | 490 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:03 has no hits.
UFO08394.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:00 Download gff for
UFO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-38-RA | 91..1065 | 1..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:50 Download gff for
UFO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-38-RA | 122..1096 | 1..982 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:41 Download gff for
UFO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mei-38-RA | 122..1096 | 1..982 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:41 Download gff for
UFO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1477184..1477288 | 1..105 | 96 | -> | Plus |
| X | 1477376..1478222 | 106..958 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:50 Download gff for
UFO08394.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1371217..1371321 | 1..105 | 96 | -> | Plus |
| arm_X | 1371409..1372255 | 106..958 | 98 | == | Plus |
