UFO08395.5prime Sequence
1107 bp (992 high quality bases) assembled on 2011-07-23
> UFO08395.5prime
CAGTCGACATGAAGGTCTTCAGCCTAAGTCTTTTGCTGGTGGCCGCCCTC
CCTCTGATGTGCCACGCCCTTCCAGCTAGCGATAAGTCCCTTTCCCTGGA
AGACACAGATCTGGACAACGAACCGGGCGAGAGTGTAAAGGAGTCCCAGG
TGCAAAAGCGGTCCGGCAGCTTCGACTACGTGGCGCACCTGAAGTCCGGC
CTGCTGTCGGGAATTGGCCAGGCCTCCGCCTCAATCGCCTCCGGCAGTTC
CGGCGGAAGCAGCGGTGGCGGTGACAGCTACAAATCCCACGAGATCGTTG
TCCATGGCAACTCTGTGGACTACGATCCCTGGTCTTTTAAGAAATCCGTG
CTGAACACTATCTTCCAGGCGGTCAAGGCCATCACCGGCGGAGTCACCGC
ACTCAAGGGTCAGCTGATCAAGGGCAGCGGCTACGCGCTGAGTGCGGGTG
GCAATCTGGTGGCCGCCGGCGGCGACAAGGTCACCGATGTGGGCAAGTCC
ATCATCAACTCGGCGCACATCAACTCGCACACCTACGCCACTAGTCACTC
CTCCTCCGGCGGCGGTCTGTTCGCCAAGCTGACCTCCTTGTCGGGCGCCT
CCTCCGGCGGCAGCAGTGGGCACAAGACCGTCTCCGCACCTGGACCCGTT
GTGCATCACGAGACGATCACCACGTACGAGATACCCACTGGCCACGCCAG
CTACGGTCCGCCATCGAAGCCCCCGACCTACAGCAGCGCCACCCATCAGT
ACCTTCCGCCGGTGGGCGGGGCTAGCTACGGCGGCGGGGCGCCCTTCAGC
GTTAGCCACCCGGCGGCCTTCGAGTCGCCGCCAAGCAACTATCTGCCATC
GGCCTATGGACAAGATGCGACCAGCGCAAATAGCAATGACTTTAACATCT
ATGGGCCGCCACTCAAAGCTAACGGATGAGAAGCCCGCAAGCGGCGGCAC
AGCTCAGAGAATCCTCAGCTTGTGCCCAACGGGAAAACTGAGTACACGCC
TCAAGACAGGTGGCTTTGATACAGTTTGCCCACGGTACCGTTTGAACAGC
AAAGTTATAACAGCTATGCATACGCTGCCAGTAACTGGCAACTTGGAATC
TGTCCCA
UFO08395.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:20:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14257-RB | 2628 | CG14257-RB | 380..1489 | 5..1097 | 4925 | 97.5 | Plus |
| CG14257-RC | 1497 | CG14257-RC | 380..1242 | 5..867 | 4300 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:20:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27079039..27079401 | 301..663 | 1800 | 99.7 | Plus |
| 3R | 32079331 | 3R | 27078660..27078953 | 13..306 | 1470 | 100 | Plus |
| 3R | 32079331 | 3R | 27079879..27080082 | 664..867 | 1020 | 100 | Plus |
| 3R | 32079331 | 3R | 27081432..27081566 | 867..998 | 385 | 94.1 | Plus |
Blast to na_te.dros performed on 2014-11-27 00:20:07 has no hits.
UFO08395.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:21:01 Download gff for
UFO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 365..1363 | 1..998 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 16:13:51 Download gff for
UFO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 378..1376 | 1..998 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:00:43 Download gff for
UFO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14257-RB | 378..1376 | 1..998 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 01:00:43 Download gff for
UFO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27078654..27078952 | 7..305 | 99 | -> | Plus |
| 3R | 27079044..27079401 | 306..663 | 100 | -> | Plus |
| 3R | 27079879..27080082 | 664..867 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 16:13:51 Download gff for
UFO08395.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22904376..22904674 | 7..305 | 99 | -> | Plus |
| arm_3R | 22904766..22905123 | 306..663 | 100 | -> | Plus |
| arm_3R | 22905601..22905804 | 664..867 | 100 | -> | Plus |
