UFO08402.5prime Sequence
1128 bp (1020 high quality bases) assembled on 2011-07-29
> UFO08402.5prime
CAGTCGACATGGAGAAGAAGGCCAAGGAGTCGCTGCGCCGCTACAAGAAG
GCCGCCCGTCACAGTGCGACGCACTCGAGCAGCTCGGACTCCACCTCGGA
CTCCGACAGCGGGAGCAGCTCGTACAGCAGCACGGACAGCGAGCAGGGCG
TGGGCGGCGTCGGCGTGGGGGTGGGCGTACCTGGTGGCGCCGGTGGTCCC
GGCGGCAGTGGCAGCGTCCACGGTCATCCCCATACCCACGGCCATGGGCA
TCATCCGCGCTCCGCGGAGCGTCATCATCGCAAAAAGAAGAGCTCACGGC
GCGGCGGCAGCTCGTCCGGAGATGAACCATCGTCGTCGCGCCGCAAGCGA
GACAAACGGGATCATGTGCAAAAGAAGCTGGTGGCCAAGCGAAATCATAT
CAAACGGAAACTGAAGGAAGCGCGCCTTAAGAAACGGGCGGCCGCCGCCC
TCAGTGGTCACGTCCATCGTTCCCTGTCGCCGACGACGCGAGCCAAGCTA
AAGAAGCTGGCCGAGCGAAAGAGGCTACGGGCTGCCAGCAAGGAGCAACG
GGAGCGGGACAAGCTGCGCGTCGTCCAACGAGACAGAGAGCGAGACCATC
ATCGATTGGGCAGCAGTAGGAGTCCGCCGAGCAGCAGCACTACCACCACC
ACCAAGATTCGCATCCATCAGGACATCGTGGGTAAGCGGCAAAAGAGTCC
AGGTTTAGGTTCTGGTCTTGGAGGCGGCAGCAGCAGCTCATCCTCGCGAA
TGCATCACCAACTGATGTCGCGAGAGAAGATCATCATCCAGACCCGCGCA
CGTGGACGTACTCCGTCCCTGGAAACGGGAGCGGGAAAGGGAGCGCGAGC
GAGAACGAGAAAGAGAGCGCGAACGCCACGATCTCTCATTGCGGGAGCGA
GATCGTCGGGATCGGGAGCGCGAGCGTGCGGAACGGGAGGCAGCCAGGGA
TATGAGCGCGCTGAAGGCCTTGGCTCGCTGCAAGAACGTCACGGGAGCGG
GAACGGCTTGGCTCGCGAAAAGTGCGTCGTCAGGAGAAGAAGAAAGGTGG
TAAACGCGGGGGTCCGGTCGAGACTTGCATCTCCGCGTATGGCAACCGGG
AACGATCCTGACCGTCCAAAGAAACGAG
UFO08402.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7358-RC | 4147 | CG7358-RC | 185..1287 | 9..1107 | 5145 | 98.4 | Plus |
| CG7358-RB | 3919 | CG7358-RB | 185..1287 | 9..1107 | 5145 | 98.4 | Plus |
| CG7358-RA | 3952 | CG7358-RA | 185..1287 | 9..1107 | 5145 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 18892757..18893452 | 704..9 | 3480 | 100 | Minus |
| X | 23542271 | X | 18892277..18892687 | 1107..701 | 1440 | 94.9 | Minus |
Blast to na_te.dros performed 2014-11-26 17:24:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 8443..8507 | 637..703 | 123 | 67.2 | Plus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 594..658 | 637..703 | 123 | 67.2 | Plus |
UFO08402.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:30 Download gff for
UFO08402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7358-RA | 175..1288 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:35 Download gff for
UFO08402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7358-RA | 178..1291 | 1..1110 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:03 Download gff for
UFO08402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7358-RA | 178..1291 | 1..1110 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:03 Download gff for
UFO08402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 18892273..18892685 | 703..1110 | 95 | <- | Minus |
| X | 18892759..18893457 | 1..702 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:35 Download gff for
UFO08402.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 18786306..18786718 | 703..1110 | 95 | <- | Minus |
| arm_X | 18786792..18787490 | 1..702 | 99 | | Minus |
