UFO08404.5prime Sequence
1128 bp (1007 high quality bases) assembled on 2011-07-29
> UFO08404.5prime
CAGTCGACATGGAGCTACGCGAACTGCGCGGTGGAAATGGTGGAAGCGTA
GGAGGCATTGGAGCAGCTACAACCGGAACCCCCGGAGTGTCAGTGAATGG
AGCCCCTAGTCCCGAACTAGGCGGCATCTGCATTGGAGGCGCCGCCGGAG
GACAGCGTATGCCCACCAGAGCGGATATATTTATGGAACAACTAAACGCC
ACCAATGCCAAGAAGGTGGCTTTGCTTCTGGTCCTCGGCTTCATCGTCTA
TCACGGCCTGCTCAACTGGAAATACGGCAGTGACTCCTGCCAGTGGCTGC
TGTCCAAGGGCCGATTTAAGGGCGACAACGAGTGGCAGCCGTACGGTTGC
ATGGTGCACAAGTACTCCCTCACTGACACAAGGCGCTGTTTGCGTTACCT
CGCCTTCTTCGACAACAAGAACAACTTTGTGTTCATTGGCGACGAGAGTA
TACGGCTGCTCTACGAACGATTTGTGGAGCAACTTCGCCTGCCATTGGCC
GCGGATGAAATGGCCGACGAGGAGGACAATAACGCCTCGGTGACTGATGG
CTCAGCCCGTTTCGAGGACAAGAAGCTGCATATGCTGGCCCAGTACATTC
GGGCGGAGGAGGTGAGTCCGTCGCTTGTGGAGCAACTGTACCGTCTGGAG
TCTGAGAAGCAGCTGTCCTCTGTGTACGTTGTGGGCTTCACCTATGCCGG
CTTGCTCGCTGGCAACACCACAGACGATGTGCTGCGGCAATATGCCGCCA
ATCTTACATTGCTGGTGGCTCCGTTTCATCGCCTGGTGGCGCAAACTTCG
CGGGTCCTCTGGAAGCTAGCAGACCGCGTGTACGAGGAGAAATTGCCCGC
GCACTGGAAGCTGCTCCAGAACGAGCAAATCGATCGATTAAACCATGTGG
CCAGAGGAGTTTTTCCGCTACACGGAGGCAAGTGTTTGGGAATCCGCCTG
CACATAGCCAATGGTTTTGCTGGACAACGCCATCGATGGTCATCAGCTGT
GCGCCCATGACCAGCGACTGAGTTCAGCTACTGTGAACATGTACTGCATG
ACTACATGGACTACATGATGCACCTGCTGCAGCAGTTCTGACATAACACA
CCCTGCAAATAGTGCCATACCTTGTTTG
UFO08404.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2938-RD | 3775 | CG2938-RD | 231..1359 | 9..1128 | 5230 | 98.2 | Plus |
| CG2938-RC | 3759 | CG2938-RC | 371..1499 | 9..1128 | 5230 | 98.2 | Plus |
| CG2938-RB | 3619 | CG2938-RB | 231..1359 | 9..1128 | 5230 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 3934426..3935179 | 1120..374 | 3165 | 97.4 | Minus |
| X | 23542271 | X | 3935729..3935997 | 277..9 | 1345 | 100 | Minus |
| X | 23542271 | X | 3935260..3935357 | 373..276 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:24:06 has no hits.
UFO08404.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:31 Download gff for
UFO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 255..1383 | 9..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:37 Download gff for
UFO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..1359 | 9..1128 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:06 Download gff for
UFO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2938-RB | 231..1359 | 9..1128 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:06 Download gff for
UFO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 3934416..3935179 | 374..1128 | 97 | <- | Minus |
| X | 3935260..3935356 | 277..373 | 100 | <- | Minus |
| X | 3935730..3935997 | 9..276 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:37 Download gff for
UFO08404.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 3828449..3829212 | 374..1128 | 97 | <- | Minus |
| arm_X | 3829293..3829389 | 277..373 | 100 | <- | Minus |
| arm_X | 3829763..3830030 | 9..276 | 100 | | Minus |
