UFO08405.5prime Sequence
1118 bp (1023 high quality bases) assembled on 2011-07-29
> UFO08405.5prime
CAGTCGACATGAGTTACATGCCAGCCCAGAATCGAACCATGTCGCATAAT
AATCAATACAATCCACCTGATCTGCCGCCGATGGTATCCGCCAAGGAGCA
GACCCTCATGTGGCAGCAGAATTCGTACTTGGGCGACTCCGGCATCCACT
CGGGTGCCGTGACCCAGGTTCCATCGCTGTCTGGCAAGGAGGACGAGGAG
ATGGAGGGAGATCCACTTATGTTCGACCTGGACACCGGTTTCCCGCAGAA
TTTCACACAAGACCAAGTGGACGATATGAACCAGCAACTGAGCCAGACAC
GCTCCCAACGTGTACGTGCTGCCATGTTTCCGGAAACCCTGGAGGAGGGC
ATTGAGATTCCCTCCACCCAGTTTGATCCCCAACAGCCGACGGCAGTGCA
ACGTCTTTCGGAACCGTCACAAATGCTAAAGCACGCGGTGGTCAATCTGA
TCAACTACCAGGACGACGCTGAGCTGGCAACCAGGGCCATACCCGAGTTG
ATCAAGCTGCTGAACGATGAGGATCAGGTGGTAGTTTCCCAGGCCGCCAT
GATGGTCCACCAGCTGTCTAAGAAGGAGGCCTCGCGACATGCCATTATGA
ACAGCCCTCAGATGGTAGCCGCTTTGGTGCGTGCCATCTCTAACAGCAAC
GATCTGGAGAGCACCAAGGCAGCGGTAGGAACACTGCACAACTTATCACA
CCATCGCCAGGGTCTGCTGGCCATCTTCAAGAGTGGCGGCATCCCGGCAC
TCGTCAAGTTGCTCTCCTCGCCAGTGGAGAGTGTGCTGTTCTATGCAATT
ACCACTCTGCACAATTTGCTGCTCCACCAGGATGGCTCTAAGATGGCTGT
GCGCCTGGCCGGCGGGCTTCAGAGATGGTTACTCTGCTGCAACGAAACAA
CGTTAAGTTTCTGGCTATCGTCACAGATTGCTTGCAAATTCTGGCCTATG
GTACCAGGAGAGCAGTTATATTCTGCCTCCGGAGGCCCACGACTCGTGCG
CATTATGCGCTCCTACGACTACGAGAGCTTCTGTGGACACTTCGCGGGTA
CTGAAAGTGCTCCTCGTTGCCTCAGCACAGCGTCATCTGGATGCGGTGGA
TGCCAGGCCCTGGCCTTG
UFO08405.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| arm-RF | 3211 | CG11579-RF | 251..1315 | 9..1062 | 5050 | 99 | Plus |
| arm-RE | 3116 | CG11579-RE | 156..1220 | 9..1062 | 5050 | 99 | Plus |
| arm-RB | 3220 | CG11579-RB | 260..1324 | 9..1062 | 5050 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1895720..1896753 | 1062..40 | 4660 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:24:10 has no hits.
UFO08405.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:32 Download gff for
UFO08405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RD | 154..1241 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:38 Download gff for
UFO08405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 253..1340 | 1..1077 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:09 Download gff for
UFO08405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm-RB | 253..1340 | 1..1077 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:09 Download gff for
UFO08405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1895704..1896753 | 40..1077 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:38 Download gff for
UFO08405.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1789737..1790786 | 40..1077 | 98 | <- | Minus |
