UFO08406.5prime Sequence
1117 bp (1003 high quality bases) assembled on 2011-07-29
> UFO08406.5prime
CAGTCGACATGCGTGAAGCCCTTTTTTCCCAAGATGGCTGGGGCTGTCAG
CATGTTAACCAGGATACTAATTGGGAAGTTCCCAGTTCGCCAGAACCAGC
CAATAAGGATGCACCCGGTCCACCAATGTGGAAGCCAAGCATTAACAATG
GTACTGATCTTTGGGAGTCCAATTTGAGAAACGGAGGTCAGCCGGCCGCA
CAGCAAGTTCCAAAGCCGTCGTGGGGTCATACACCATCCTCTAACTTAGG
TGGAACATGGGGTGAGGACGACGATGGCGCCGATAGTAGTAGTGTGTGGA
CTGGAGGAGCTGTTAGCAACGCGGGATCCGGAGCTGCAGTGGGAGTAAAC
CAAGCCGGAGTTAATGTCGGTCCAGGCGGTGTTGTTTCGTCTGGCGGACC
TCAGTGGGGACAAGGTGTCGTTGGCGTCGGACTTGGATCAACTGGAGGTA
ACGGGTCAAGCAATATAACTGGATCGTCTGGAGTCGCAACAGGTAGTAGC
GGAAACTCCAGCAACGCTGGTAACGGTTGGGGAGACCCTCGTGAAATACG
CCCTTTGGGAGTTGGTGGCTCCATGGATATTCGAAATGTTGAACATCGCG
GCGGTAACGGTTCTGGAGCAACTTCGAGCGATCCACGAGACATTCGCATG
ATCGATCCGCGTGACCCTATTCGAGGAGATCCCCGTGGAATATCTGGTCG
TCTTAATGGGACCTCTGAAATGTGGGGTCATCATCCACAAATGTCCCATA
ACCAGTTGCAAGGTATCAACAAAATGGTTGGTCAAAGTGTAGCAACTGCC
AGCACCAGTGTCGGAACATCTGGCTCGGGCATCGGTCCTGGAGGTCCCGG
TCCTAGTACAGTATCAGCAATATCCCAACACAGTGGGGCCCTGCTCAACC
GGTAAGCGTTGGTGTAAGTGGTCCCAAAGACATGTCAAACAGATAGTGGA
TGGGAGGAACATCACACCGCTCAGCGTCGCAGTATTCTAACTACGATGAT
GTACATCGTGTGGGTCAGCAAACTCGTGTTCCCGCTGCAAGCGTCCCTGA
AAGACTGACTGATTCGATAGGTCGTATTAGTCATCTCATGCTGCCAGCGA
CGGAAGTATAGAAAGCG
UFO08406.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gw-RJ | 4786 | CG31992-RJ | 352..1447 | 9..1091 | 5110 | 98.5 | Plus |
| gw-RI | 6807 | CG31992-RI | 1446..2541 | 9..1091 | 5110 | 98.5 | Plus |
| gw-RA | 5036 | CG31992-RA | 596..1691 | 9..1091 | 5110 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 657025..657685 | 1091..444 | 2615 | 97.3 | Minus |
| 4 | 1348131 | 4 | 657901..658337 | 445..9 | 2185 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:24:13 has no hits.
UFO08406.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:32 Download gff for
UFO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RH | 181..1290 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:40 Download gff for
UFO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 589..1698 | 1..1096 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:10 Download gff for
UFO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gw-RA | 589..1698 | 1..1096 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:10 Download gff for
UFO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 657018..657684 | 445..1096 | 97 | <- | Minus |
| 4 | 657902..658343 | 1..444 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:40 Download gff for
UFO08406.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 677644..678310 | 445..1096 | 97 | <- | Minus |
| arm_4 | 678528..678969 | 1..444 | 99 | | Minus |
