UFO08408.5prime Sequence
1107 bp (995 high quality bases) assembled on 2011-07-29
> UFO08408.5prime
CAGTCGACATGCGTAGGAGGCGTGGCACGCCCCTGGGCGTCAGCTGGACG
AACTGCGTCCTGCTCCTGGCCACCGGTCTGCTGGTGGTGCTCATTTCGGT
GCACGCCAAGAACCCCAGGCCGCATCGAGGACTACCCGCCCCGGCTCCTG
CACCAGTTCCTGCATCCGTAGATCAGGTGGCAACTGAAAATGCCCACAGG
CGGGAACCTACCGTCGATGGGAGTGTACTTCAACGGCTATCGGGTTCAGA
TAGGGCTGTTGACGAGGATGAGGATGTCGATGAGGATGAGGATGAGGGGC
TAAAGCACCAGCACCTCGAGCATCGGCAACAATTTGACGCATATCTGGGC
ACAATCCGACGGCTGCGTCGTCCATACCGCAGCAAATACACCATCGAGCA
GCTGATGCGACTGCATGTGACACCAAAGGTATCCGGAGACATTGACATGG
ATCCCTGCAAGGCGGGCGGTTTCATGGGCGACATTGCCCTGCCGGAGGGT
GATTCCGGCCCGGTGGTTGCCCACACGCCCATCGACGACGAGGAGCAGGA
GCGCCAGGAGGTGGAGCAGCTGCTGGCTGACTCGCCCAGCCCGGTTCACG
ACCCCCCTTCCGTTTCCGGTGCGGCCAACTCAGGGCCGACCAAGTTCAAT
GCCACCTTCCAGCTGGATCTGGAGAAGCTCAAGCAGGAGGTCTACCACGA
GGGCCTACAGGTGGAGGAGGAGGGCCTCACCGACATCATCCGCAAGAAGA
CCAAGCTGCCCAGCTCATGTCCGGTCAACCTGAAGGCAGGACAAAGCCAG
TCACAGAGTCAGAGTGCCAATGAACCCGTGAAGCCCGGTTCGGAATCCGC
CCTCCGATTACGCGCAAGCATCCAGCTACAAGAATGAGGTACTGCCTCCG
TCGGAGCAGCGAATCAAACGGACAAGCCGGCACGGTTGACGCTGGCCGAG
ATGGAACCCAAGTTCAGCAACAAGACGCAGTCGCTGCACCGTAATGTGAC
ACACGCAGATTCAGTCGACAACAAGGACATCGAGGACGATCGGCACAATT
TTGTGCCGGGAAGGAGCGTCCAAGATTGTGCCACTCTTGCGAACATCGAT
CCACTCC
UFO08408.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| tok-RC | 5364 | CG6863-RC | 325..1436 | 9..1107 | 5040 | 97.7 | Plus |
| tok-RA | 5368 | CG6863-RA | 329..1440 | 9..1107 | 5040 | 97.7 | Plus |
| tok-RB | 5247 | CG6863-RB | 208..1319 | 9..1107 | 5040 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24727870..24728327 | 9..466 | 2290 | 100 | Plus |
| 3R | 32079331 | 3R | 24742610..24742957 | 465..812 | 1725 | 99.7 | Plus |
| 3R | 32079331 | 3R | 24743159..24743393 | 809..1040 | 885 | 96.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:24:16 has no hits.
UFO08408.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:33 Download gff for
UFO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RA | 323..1389 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:42 Download gff for
UFO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 201..1267 | 1..1061 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:11 Download gff for
UFO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| tok-RB | 201..1267 | 1..1061 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:11 Download gff for
UFO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24727863..24728326 | 1..465 | 99 | -> | Plus |
| 3R | 24742611..24742957 | 466..812 | 99 | -> | Plus |
| 3R | 24743163..24743418 | 813..1061 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:42 Download gff for
UFO08408.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20553585..20554048 | 1..465 | 99 | -> | Plus |
| arm_3R | 20568333..20568679 | 466..812 | 99 | -> | Plus |
| arm_3R | 20568885..20569140 | 813..1061 | 94 | | Plus |
