UFO08411.5prime Sequence
1117 bp (1021 high quality bases) assembled on 2011-07-29
> UFO08411.5prime
CAGTCGACATGATGTGGCACTTGCTGCGCGCCCTGCTCGTGGTAGCCGCC
GTCTTGGATGCACTGCAACCGGCGGTCGGACAAAACGACAACTACTACAA
CCCCAACCAGAACCAGCAGAATCCCCAGCAGCCGCTACTGCCCAACCAGC
AGTGGGGTAACAATCCACAGACGAATCAGTATAGCAACAACAACCAAAAC
TTTGGCCAAACGAATCCCAGTGATCGCCCGCCGTACAGGACCGATTCGGG
GAGCTACAACGATATTGCCGGGCAAGATGACTATAATAAACGAGTGGGAG
GAGGCTATCAGGACAACGAGGAGCCGAGTCTGACTCGTGGAAAGTCGTCC
TATAACATCAAGGCCACCTTCCTGGAATCGCTGCATTCCAGGGAGCCCAC
TTACTTCATTGTGGCATCTCGAATGGTCAGACCTGGTCTAATCTATCAGG
TGTCCGTATCCATTCTTCAAGCTCAGTACCCGATAACCGTTCATGCCAGC
ATCGCGTGCGATGGTGTCCAAATCAGCGGAGACTCTAAGGATGTCAAGGA
GGGCATACCGGAGACGTTGCTCATGAGGATCCCACCAACTAGTGTGACTG
GAAGCTATAAGCTTCGAGTGGAAGGTTTCTACCAGAACGTTTTCGGTGGC
CTCGCCTTCCTGAACGAAACAAGACTAGACTTCTCACAGCGCTCCATGAC
GATATTTGTGCAGACCGATAAGCCTCTTTATATGCAAGGGGAAACTGTGC
GATTTAGACCATTCCGATCACCACCGAACTGAAGGGATTTGACAATCCCG
TCGATGTGTACATGCTGGATCCAAACAGGCATATTCTTAAACGTTGGCTA
TCGCGTCAATCAAACTTGGGTTCCGTTTCGCTGGAGTACAAACTTTCGGA
TCAGCCCACTTTTGGAGAATGGACTATCCGTGTAATAGCTCAGACAGCAA
GGAGGAGAGTCACTTCACGTGAGAATACTATCAGACCGATTCGAAGTGAA
TGTACATGCCTGCGTACTTCTTCACAACGGATTCGTTATCTACGAGGTGA
TGCTAAACTTACATGGCTACAGTAAGGCATCTCCCAATCAGCCACGAATC
GGCCCAATGGATCTACA
UFO08411.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:23:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mcr-RA | 6296 | CG7586-RA | 175..1219 | 9..1044 | 4950 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8079763..8080610 | 855..9 | 4190 | 99.9 | Minus |
2L | 23513712 | 2L | 8079479..8079668 | 1037..855 | 570 | 92.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:23:55 has no hits.
UFO08411.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:28 Download gff for
UFO08411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcr-RA | 150..1217 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:30 Download gff for
UFO08411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcr-RA | 163..1230 | 1..1052 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:58:59 Download gff for
UFO08411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mcr-RA | 163..1230 | 1..1052 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:58:59 Download gff for
UFO08411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8079460..8079667 | 856..1052 | 93 | <- | Minus |
2L | 8079763..8080615 | 1..855 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:30 Download gff for
UFO08411.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8079460..8079667 | 856..1052 | 93 | <- | Minus |
arm_2L | 8079763..8080615 | 1..855 | 99 | | Minus |