UFO08412.5prime Sequence
812 bp (807 high quality bases) assembled on 2011-07-29
> UFO08412.5prime
CAGTCGACATGGCTCCGCGTCGCAACAGCAACATCAGCAGCAGCGGCAAC
AGCACCCAGCAGCAGCACCAGCAACAGTTGCAGCAGCAGCACCAGACGCA
GCAGCATCAACTGCTGCAGTTCTACGCGGAGAACGTGAATTCTTCAGGCG
TCCTAATGGCGCCCATGCAGGGAACCGGTGGCGTTGGCGGCGTTGGCGGC
GGGGGCATGGTCCACTGCTGCCTGCCCAGCGGAAACTGTCGCAAACTGGA
CACCCTGATACACCTGAACGAGCTCTCCCTGGCGGACTGCATCCGTGTGC
TGTGCAACAACGAGAACTGCAGCGCAGGCCAGTACATGCATCGCGAGTGC
TTCGAGTGGTGGGAGGCGAGCGTGCTGCAGGCACTGAAGGCCAACGGTCG
TGCTCGATCCTGGTCGGAGCGGCAGCGTCTGCAGCACCTGTGGACCAAGA
AGGGCTACGAGCTGGTCCAGAAGGCCTGCAGCTGCAAGTGCGGCAGGGGA
CAATTGCGCAAGGACCTCTACTGGGTGCCGCCGAGCAGCCAGGGCGTCAT
ATACCTCAACGGGTCTGGCAACCGGCCCACTCTGGCCAATGGCAGCCTCA
GCGAGGACGACGACAAGAAGAATGCCAAGAAGAAGAGGAACCGCAACAAC
AACAACAACAACGGCGGCGGCGGTGGTGGTGGTGCTGGTGTCAATGGCAA
CACCAAAACCCCCTTGAGCAACAAACAACGGCAACAGCTACGCCGGGACT
CACGGCCAATCCAATGTGGGCGTCATAGGGTCGGGTTTGCCCCAAACAAC
GGCACACCGGCC
UFO08412.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hdc-RD | 14807 | CG15532-RD | 1013..1814 | 9..809 | 3835 | 98.9 | Plus |
| hdc-RC | 4518 | CG15532-RC | 1013..1814 | 9..809 | 3835 | 98.9 | Plus |
| hdc-RA | 4518 | CG15532-RA | 1013..1814 | 9..809 | 3835 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:23:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30278944..30279739 | 9..804 | 3730 | 99 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:23:59 has no hits.
UFO08412.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:30 Download gff for
UFO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdc-RC | 1011..1814 | 9..812 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:32 Download gff for
UFO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdc-RA | 1013..1816 | 9..812 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:01 Download gff for
UFO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hdc-RA | 1013..1816 | 9..812 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:01 Download gff for
UFO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30278944..30279747 | 9..812 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:32 Download gff for
UFO08412.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26104666..26105469 | 9..812 | 98 | | Plus |
