UFO08413.5prime Sequence
1110 bp (1010 high quality bases) assembled on 2011-07-29
> UFO08413.5prime
CAGTCGACATGGACGACACACAGCACTTCTGCCTGCGCTGGAACAACTAC
CAGAGCAGCATAACCTCGGCGTTCGAGAATCTGCGCGACGACGAGGCCTT
CGTGGATGTGACCCTCGCCTGCGAGGGACGCAGCATCAAGGCACACCGCG
TCGTCCTCTCCGCCTGCAGTCCCTACTTCCGCGAGCTGCTCAAGAGCACA
CCCTGCAAACACCCGGTCATACTGCTGCAGGATGTCAACTTCATGGACCT
GCACGCCCTGGTGGAGTTCATCTACCACGGCGAGGTCAACGTGCACCAGA
AGTCCCTGCAGTCCTTCCTTAAGACCGCCGAAGTGCTGCGCGTCTCTGGA
CTCACGCAGCAGCAGGCAGAGGACACACACAGCCATCTGGCTCAGATACA
GAACCTGGCCAATTCCGGCGGCCGCACGCCGCTCAACACGCACACCCAAT
CGCTCCCACATCCGCACCATGGCTCGCTACACGACGACGGCGGCTCCTCG
ACCCTCTTCAGCCGCCAGGGAGCGGGTTCGCCACCGCCGACGGCGGTGCC
ATCGCTGCCCTCGCACATCAACAACCAGCTGCTGAAGCGCATGGCCATGA
TGCACCGCAGCAGTGCCGCCGCCGCCGCCGAGGAGACCTCCCACGCCTTT
AAGCGTCTGCGCGGCTCGGACAACAGCCTGCCGCTGTCCGGCGCCGTTGG
CAGTGGCAGCAACAACAACAGCCCCGACTTGCCGCCGCTTCATGCGCGCA
GCGCCTCGCCCCAGCAGACTCCGGCCGACTTCAGTACGATCAAGCACCAC
AACAACAACAACACGCCGCCGCTGAGGAGGAGAAGCGCAACGGACCCACA
GGCAACGGAAACTCTGGCACGGCAATGGCAATGGCAACGGAGCGAGCAAC
GGCAACGGAATCTCCATCAGCGACAAGCTGGGCCAGCCTCACACTTTCGC
GCTGGCTCGAGCGGGCGCCGATGATGTCAAGTCGAGCCCATGACATGTCT
GCTCTAACAACAATGCCATGCAACGACGAACACAAGCACGACTCCACCGG
CGAGCACGATGCTATTCGCTCCAGTAGCGCGACGCGCAGGAATCCTGGAC
TTCCGGCACG
UFO08413.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| br-RO | 4368 | CG11491-RO | 975..2063 | 4..1084 | 5095 | 98.5 | Plus |
| br-RN | 4546 | CG11491-RN | 970..2058 | 4..1084 | 5095 | 98.5 | Plus |
| br-RM | 4213 | CG11491-RM | 637..1725 | 4..1084 | 5095 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1636096..1636550 | 384..837 | 2225 | 99.8 | Plus |
| X | 23542271 | X | 1635830..1636020 | 193..383 | 955 | 100 | Plus |
| X | 23542271 | X | 1624517..1624707 | 4..194 | 940 | 99.5 | Plus |
| X | 23542271 | X | 1636639..1636887 | 837..1079 | 765 | 93.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:24:20 has no hits.
UFO08413.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:34 Download gff for
UFO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RB | 841..1945 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:44 Download gff for
UFO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 635..1739 | 1..1095 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:13 Download gff for
UFO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| br-RM | 635..1739 | 1..1095 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:13 Download gff for
UFO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1624515..1624707 | 1..194 | 98 | -> | Plus |
| X | 1635832..1636020 | 195..383 | 100 | -> | Plus |
| X | 1636096..1636549 | 384..836 | 99 | -> | Plus |
| X | 1636639..1636907 | 837..1095 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:44 Download gff for
UFO08413.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1529865..1530053 | 195..383 | 100 | -> | Plus |
| arm_X | 1518548..1518740 | 1..194 | 98 | -> | Plus |
| arm_X | 1530129..1530582 | 384..836 | 99 | -> | Plus |
| arm_X | 1530672..1530940 | 837..1095 | 93 | | Plus |
