UFO08415.5prime Sequence
1087 bp (984 high quality bases) assembled on 2011-07-29
> UFO08415.5prime
CAGTCGACATGCTGCGAATTGATAAAATACTTGTGGTTTCGCGTGGGAAG
GCGAGTTCCGTTGAAGTCGCAGCACTGCGTTACATAGCTGCATCTATTGC
TACAGCCACGTTGGATTCTCAATCCCAAATAAAGGCGGTCTCCAGTCCAA
CGCTGTCCGAGCCGTGCTTAGAGGAGCAGCCACAAAAAGGAACTGAAAGT
ACGGATGTGGCCAACACAGGCAGCAGCGCCGGAAGTGGAGGCCTAGGCGT
ATTGCAGAAATTCAAACGCACCTTGAACAACTTTAACAACAAAAATCAAT
TGCACATCTCTCCGCTATCACCAGCGGCAGTAGCACCTATGATAACGACG
ACCACAGCTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGCTCCGGAAA
ATACCGGTTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACGCCGTAAGA
CGAAGTACAACCGACGCGACAAGTGTAATTCTGGTGATTCAGGCATACAG
ATCGAACTAGAACAGGATGAGCAATACTCCCGTGCGACAATGGCCGTGAG
CCGCCAGGATGAGCCCCGCGCTTTTGCGTTAACCAATGGATCGTGTGGTG
TCGCGCTCTCTAAAATGCGAGCCATACGTCGCACCAACTCTGCAAAGGCG
AGCAGCATCCTTGGGCCCTTTATCGTTAAAACCAAAATAGCCAAGCACTT
AAACATTGGAGAGTCTGACAAAGCCGAGCGCAAAGCGCCCGAGTCTCTAC
CCACGCGATCGCTTAGCCAACCGAACGGCCTAGAGTCCTACGGTATGGGT
CGTCCCGATCTTGAGGATAGCGACAGCGATAGTGTCGCGTCAAACGAGGA
AGCTATAAGCTTCTACCCAACTACCTATGCGGAGGTGCTTTACACTTCAC
GGCCCGGCGGTCCTCAAGAACTAGGGCTAGAGAGAGGATGCTTATTGAAA
TACTGCGCAGGAGTTGGACCTGGTGGTCGGCGAATAGATAGAAACATCTG
GTGGAGACTATGGGTCTGACTGGGCTATCCCAGGGTTGTGCGGATATCAC
TGTCAGAGACGACATTCCTTAAGCCCCAGCTGCCGCT
UFO08415.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RE | 3168 | CG43976-RE | 163..1135 | 9..977 | 4675 | 99.1 | Plus |
| RhoGEF3-RB | 3086 | CG43976-RB | 163..1141 | 9..977 | 4605 | 98.5 | Plus |
| RhoGEF3-RK | 3157 | CG43976-RK | 150..1124 | 9..977 | 4535 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 301160..301681 | 331..852 | 2580 | 99.6 | Plus |
| 3L | 28110227 | 3L | 300901..301108 | 126..333 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 300732..300848 | 9..125 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 301756..301865 | 851..959 | 390 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:24:24 has no hits.
UFO08415.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:35 Download gff for
UFO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..1145 | 9..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:45 Download gff for
UFO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..1145 | 9..985 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:15 Download gff for
UFO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..1145 | 9..985 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:15 Download gff for
UFO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 300901..301108 | 126..333 | 100 | -> | Plus |
| 3L | 300732..300848 | 9..125 | 100 | -> | Plus |
| 3L | 301163..301681 | 334..852 | 99 | -> | Plus |
| 3L | 301758..301865 | 853..959 | 96 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:45 Download gff for
UFO08415.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 300732..300848 | 9..125 | 100 | -> | Plus |
| arm_3L | 300901..301108 | 126..333 | 100 | -> | Plus |
| arm_3L | 301163..301681 | 334..852 | 99 | -> | Plus |
| arm_3L | 301758..301865 | 853..959 | 96 | == | Plus |
