UFO08419.5prime Sequence
1100 bp (981 high quality bases) assembled on 2011-07-29
> UFO08419.5prime
CAGTCGACATGGAAGGCTCAGACTTTGTGGATCCAGCCTTTTCTTCAGGA
GAACGAATATCGGCATCTGATCTCAATTCGGAGCATATTATTCAGGCCGA
GAATCACAGTTTTGCTAATCGAATTTCTATGGATATGGATGTCCCTGATG
GGCACCAGCTGGACAGCAACTTAACCGGATTTCGATGGAAGCGAGTTCTT
AACCCAACCGGACCGCAGCCCCGCCCGAGACATGGACACCGTGCGATAAA
CATCAAAGAGCTAATGGTCGTCTTCGGCGGCGGAAACGAAGGAATTGTTG
ACGAGTTGCACGTTTATAATACTGTTACTAATCAGTGGTACGTCCCAGTG
CTAAAAGGTGATGTACCGAACGGATGCGCTGCTTATGGATTTGTTGTGGA
GGGTACTCGCATGTTTGTTTTTGGGGGAATGATCGAATACGGAAAATATT
CAAACGAGCTCTATGAGCTACAGGCAACTAAATGGGAATGGAGAAAAATG
TATCCAGAGTCACCAGACAGTGGGTTGTCACCGTGTCCTCGCTTGGGTCA
CAGCTTTACAATGGTTGGTGAAAAAATATTTCTTTTCGGCGGACTAGCAA
ATGAATCGGACGACCCAAAAAATAATATTCCAAAATACTTAAACGACTTG
TACATACTGGATACTCGAGGAGTTCACAGTCATAACGGAAAGTGGATAGT
ACCTAAAACATATGGGGATAGCCCGCCACCACGAGAGTCGCACACAGGCA
TATCGTTTGCTACTAAAAGCAACGGAAATTTAATCTTTTGATTTATGGTG
GAATGAGCGGCTGCCGCTTGGGAGATTATGGTTGCTAGAAACAGACTCCA
TGACTTGGTCGAAGCCGAAACTTCAGGGGAGGCGCCGCTACCCGGCTCGT
TGCAAAGTTCTACAATGATGGCAACAAATGTATGTCTTTGGTGCTGGATT
CCCTTAGTGATCAATGATCAAATCGACACCGAGCGTGAATGAAACGTACA
TCACTCTGCTGTCTTGACCTTGAACATGAACATGGAACGTCCCATTGAAC
CTGTAAGGAAAAGTTCACGTGCCCTGTCTGCCACTGTGCAATTGGATCAC
UFO08419.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hcf-RG | 7812 | CG1710-RG | 148..1256 | 9..1095 | 4760 | 96.7 | Plus |
| Hcf-RF | 5190 | CG1710-RF | 452..1560 | 9..1095 | 4760 | 96.7 | Plus |
| Hcf-RE | 5372 | CG1710-RE | 526..1634 | 9..1095 | 4760 | 96.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 360691..361006 | 9..324 | 1580 | 100 | Plus |
| 4 | 1348131 | 4 | 362303..362613 | 324..634 | 1555 | 100 | Plus |
| 4 | 1348131 | 4 | 362671..362882 | 635..844 | 960 | 99.1 | Plus |
| 4 | 1348131 | 4 | 362944..363073 | 843..968 | 390 | 93.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:24:34 has no hits.
UFO08419.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:37 Download gff for
UFO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RA | 407..1453 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:53 Download gff for
UFO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RA | 446..1492 | 1..1035 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:22 Download gff for
UFO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hcf-RE | 520..1566 | 1..1035 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:22 Download gff for
UFO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 360685..361006 | 1..324 | 98 | -> | Plus |
| 4 | 362304..362613 | 325..634 | 100 | -> | Plus |
| 4 | 362671..362882 | 635..844 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:53 Download gff for
UFO08419.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 381311..381632 | 1..324 | 98 | -> | Plus |
| arm_4 | 382930..383239 | 325..634 | 100 | -> | Plus |
| arm_4 | 383297..383508 | 635..844 | 99 | -> | Plus |
