UFO08421.5prime Sequence
1106 bp (995 high quality bases) assembled on 2011-07-29
> UFO08421.5prime
CAGTCGACATGGAGCCATCGTTGGACAACTACAAGCTGAGCTGCGAGCTC
CTGGGCCACAGCATGGATGTGCGGGCGGTAGCGGTGGGACCTCCAACTCC
GGAAGGTCGCCAGACCATTCTGTCCGGTTCGCGGGACAAGAGCACCAAAG
TCTGGAAGCCCCATGGGAACGAGTACTTGGAAAGCCTTACTTTGCAGGAC
CACAAGAACTTCATCTCGTACATCTGCTTCCTGGAGTCGGAGCGGTGGAT
CTGCACGGCCAGCAACGACGCCACCATCTGCATCTACAAGCAGGACGGCT
TTGTGCCCCTGTTGACCCTCAAGGGTCACGAGTCCACGGTGTGTGCTCTC
TCGGCAGGATTGGAGCCACGAAGCCTCATCAGCGGCAGCTGGGACAAGAC
CGCTCGGGTGTGGACCATCAGCGAGGCGGGTGATGTGTCCTTCGTTGCTT
TAGAGGGACACGAGGCGGCGGTTTGGGCGGTGGCCACCTTGAAGGAGCAG
CGGAAGTATGTGACTGGTGGTGCGGACAGGAACATCTACTACTGGAACGC
GAAAGGCGAGAAGCTGCGCCTGCTTAAGGGTCACACGGATTGCGTGAGGG
GTGTCATGGGACTGGATGCGAACACACTGCTCTCCTGCGGAAATGACGCT
GTTCTCCGCTTCTGGAACGAGGATGGTGAGTGCGTGCGCGAGATGAACGG
ACACAGCAACTACATCTACTCCATGGCTCGCAATGAGGCTCTGGGCGACC
AAGTGGTGGTCTCCTGCGGCGAGGACAGCACGTTGCGCATGTGGAATGTG
ATCACCGGCGATGAGCTGGGAGCACCCATCATCCATCCCGGCATTTCAGT
GTGTCCGTAACGTGCCTACAGAACGGGGGACATTGTCACCGGGCTGTAGC
GATGGTGTGGTGAGGGTATTCAGCCACGTTCCTGCTCGCCAAGCAAGTGA
AGCAGTCTTAAAGCCTTCGACTTAGTAGTGCACCTAGAAGGTCTCAGATA
TGAGAGATGGTGGCGTCAGAAAACTGAACTCAGTCGAGCTCTTCTGTCAA
TGACGCGCGAGGTCACGAGATGGTGCGGCATGCCAATGTTCCGTGAACGG
CTAACA
UFO08421.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Plap-RB | 2592 | CG5105-RB | 157..1266 | 8..1097 | 4935 | 97.4 | Plus |
| Plap-RC | 2746 | CG5105-RC | 311..1420 | 8..1097 | 4935 | 97.4 | Plus |
| Plap-RA | 2729 | CG5105-RA | 294..1403 | 8..1097 | 4935 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1168728..1169566 | 999..162 | 3910 | 99 | Minus |
| 2L | 23513712 | 2L | 1169627..1169786 | 167..8 | 800 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:24:38 has no hits.
UFO08421.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:38 Download gff for
UFO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RB | 126..1132 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:55 Download gff for
UFO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 287..1293 | 1..1004 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:23 Download gff for
UFO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Plap-RA | 287..1293 | 1..1004 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:23 Download gff for
UFO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1168690..1169561 | 167..1031 | 98 | <- | Minus |
| 2L | 1169628..1169790 | 1..166 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:55 Download gff for
UFO08421.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1169628..1169790 | 1..166 | 97 | | Minus |
| arm_2L | 1168690..1169561 | 167..1031 | 98 | <- | Minus |
