UFO08427.5prime Sequence
1107 bp (991 high quality bases) assembled on 2011-07-29
> UFO08427.5prime
CAGTCGACATGGCCGCCCAGGAAAACACGGAGATCAGCACAAAGTTCTCA
ACGCTGAACGTGAACGCGGTAGAATTTGTGCCCAGTTTCAGTTACAACAG
CGTTGTGAATGTAGCTGAGGAGGCGGCGGCAGTAGTGGTTGCAGCGGCTG
CGGCCGAGGAGACGGCGGATCCGGGTCCCGCCTCCGGTTCAGCCACGCCA
GCCACCACACCCGATTCCGTCGGCAGCGGGGGATCCACAGCGGGAGCAGC
TCCACCGCCTCCAACTGCACAGGGGGCGGGGGCAGCAGCACCCTCAGCAC
AGCCGCCCACATCATCCTCCAATTCCGCATCGCCAGCGCCGGGTTCGCCA
GCCACCACGCCTTCAGCAGGAGCAGCGGCGGCGGATCCAACGCCCATCGA
TGGTCTCAACCCCTCGGACAAAATCGCAAACAATGAAACCGATCCTGCTG
ACAGCTGGGATGTGGACGATGCAGTGATCACGCCCGAGGATGAGGAGGTG
GAAGATGCTGAGTTCACGGAGGGCGAGGCCACGCCGAAGGTGTCCAAGAA
GAAGGTGGTTAAGGTGGAGGAAAATAGGAGCAAGCGTGAGCACGTGAATG
TTGTGTTCATTGGCCATGTTGATGCTGGCAAATCAACAATTGGCGGACAG
ATCATGTCGCTCACGGGCATGGTGGACAAGCGAACACTGGAGAAGTACGA
GCGGGAGGCACGTGAGAAGTCGCGTGAGAGTTGGTACTTGTCCTGGCGCT
GGACACCAACCAGGAGGAACGCGACAAGGGCAAGACCGTCGAGGTGGGAC
GAGCCTTCTTCGAAACGGACCGAAAGCATTTCACTATCCTCGACGCACCC
GGTCACAAGAGCTTCGTGCCTAACATGATCAGTGGCGCGGCGCAGCCGAT
CTCGCAGTGCTGGTCATCTCGGCGCGAAAGGTGAATTCGAGACGGCTTCG
ATCGCGGCGCCAGACCGAGACATGCCATGTGCCAGACCGCCGCGTTAGCA
TCTGGTCGTGCTGTCAACAAATGATGACCACGTCATGGATCAGACCCGCT
ACACGATGCAAGAACAGAACTACATACTCAGGAGCTTGGCCTCACTGGCA
GGACCTT
UFO08427.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Elf-RB | 4120 | CG6382-RB | 546..1611 | 9..1053 | 4805 | 97.8 | Plus |
| Elf-RD | 3003 | CG6382-RD | 106..1171 | 9..1053 | 4805 | 97.8 | Plus |
| Elf-RA | 3443 | CG6382-RA | 546..1611 | 9..1053 | 4805 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12434997..12435423 | 9..435 | 2135 | 100 | Plus |
| 2L | 23513712 | 2L | 12438071..12438413 | 621..959 | 1500 | 98.5 | Plus |
| 2L | 23513712 | 2L | 12437812..12437998 | 435..621 | 935 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:24:49 has no hits.
UFO08427.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:40 Download gff for
UFO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elf-RA | 556..1601 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:01 Download gff for
UFO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elf-RA | 536..1581 | 1..1029 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:31 Download gff for
UFO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Elf-RA | 536..1581 | 1..1029 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:31 Download gff for
UFO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12437813..12437998 | 436..621 | 100 | -> | Plus |
| 2L | 12438072..12438494 | 622..1029 | 96 | | Plus |
| 2L | 12434987..12435423 | 1..435 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:01 Download gff for
UFO08427.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12434987..12435423 | 1..435 | 99 | -> | Plus |
| arm_2L | 12437813..12437998 | 436..621 | 100 | -> | Plus |
| arm_2L | 12438072..12438494 | 622..1029 | 96 | | Plus |
