UFO08428.5prime Sequence
1126 bp (1025 high quality bases) assembled on 2011-07-29
> UFO08428.5prime
CAGTCGACATGTTGGCACAAACGCAAATTATCCCAACGCCTTGGCGACTT
TTGACCCTGGCTTTATTCTGCTCAGCTTTATTTTTGGCCAGTGAGGCTCA
AAATGCCATCCCAAAAACGAATCCTGCCTCGCTGCTGATACAGAAGACAT
CCTTCTCCTGCGCCGGACGTCCAGCCGGATATTATGCGGATGTGGAGACG
GGCTGCCAGGTGTACCACATGTGCGATGGCCTGGGTCGCCAGTTCAGCTA
CACCTGCCCAAACACGACACTTTTCCAGCAGCGAATGCTTATCTGCGACC
ACTGGTACATGGTGAACTGCTCCAAGGCGGAGAGCAACTATGCTGCCAAT
CTCCTAATTGGTCAGCGGGACAAGCCCTTCGTAAACGACGAGGAAAACAG
CTTGCGCACTCCAAGACCCGATCTTCTGGATCGTCCTTATGCGCCCGACT
ATTCCGGCGAGTCCTTCAGAAGCCAATATAAGCAGTTTACTTCCAACCAG
AATCAGATACGTGATGAGTCCGTCAAAGGAGCCGGTGCGGGTAAATCGGA
TCCCCAGATATCGCAGACGCGTTGGCGCATTCCACCACCCAGCCGGACGA
TCCTTCCACCGGCCTATGAACCGCAAATCGAGCTGCCCAGTGCCCAATCG
GCCAAGCCCAGGATACCCATTATCACTAGCACCACCACAACCACTCGAGC
GACCACCACCACCCGACCAACAACCACAACTCGTGCCACCACCACAACAA
CAACCACTCGAAGACCTCCGGTAACCGCCAGGCCGAAGGAGGCCTTGCAC
AACAGGCGGCCAAATTTCCAGGAGCATGATATGGATGACTTGGGCACCAG
CCACAGCACACGGTACACACCTCGGCAGACTTCAACTCGCGGAGTCGCCG
CTCCGTGAAACGAAACAGTCCAGCACCAAGCTGACCAAGTTCATCAGCCG
CCGTCCAGATCTATGAGCCACCCTTTGTGTACCCCATCTACAATCTAGAG
AGTCCCAGACCCAGACGCGCAGTCGCACCACCCTGCGCACATCAACGGCG
GCTTCTTCAGTCTGTTCAGTTCGCAGGGAGGTCAGCACCAACTCCACGAC
ACTGATCGACGAAGACCTTGCCGGGT
UFO08428.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14880-RA | 2591 | CG14880-RA | 505..1638 | 3..1120 | 5175 | 98 | Plus |
| CG14880-RB | 2599 | CG14880-RB | 513..1646 | 3..1120 | 5175 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16361353..16361937 | 1057..481 | 2495 | 98.3 | Minus |
| 3R | 32079331 | 3R | 16362179..16362447 | 362..94 | 1345 | 100 | Minus |
| 3R | 32079331 | 3R | 16362002..16362124 | 482..360 | 615 | 100 | Minus |
| 3R | 32079331 | 3R | 16365516..16365609 | 96..3 | 455 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:24:52 has no hits.
UFO08428.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:40 Download gff for
UFO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RA | 502..1641 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:04 Download gff for
UFO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 512..1651 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:33 Download gff for
UFO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14880-RB | 512..1651 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:33 Download gff for
UFO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16361277..16361935 | 483..1124 | 96 | <- | Minus |
| 3R | 16362002..16362123 | 361..482 | 100 | <- | Minus |
| 3R | 16362181..16362445 | 96..360 | 100 | <- | Minus |
| 3R | 16365517..16365610 | 1..95 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:04 Download gff for
UFO08428.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12186999..12187657 | 483..1124 | 96 | <- | Minus |
| arm_3R | 12187724..12187845 | 361..482 | 100 | <- | Minus |
| arm_3R | 12187903..12188167 | 96..360 | 100 | <- | Minus |
| arm_3R | 12191239..12191332 | 1..95 | 97 | | Minus |
