UFO08431.5prime Sequence
1137 bp (1015 high quality bases) assembled on 2011-07-29
> UFO08431.5prime
CAGTCGACATGCTGCGGAATAGCACTTACCAGTACAATCTGCCCGTCGAT
TACCACAATATTCAGCAAATGGCAGTCGCTGGCGACATGATGGAGGACTT
TGTGGTCATATTTCGCGATATGATGGGACGGTACCTCGACATTGGCGAGG
ATATGAACGTACCTGATGACTTCACACAGAAAGAGATGCAGACGGGCCTC
TGGTGGCGACACTTGGTGGCCGGTGGCATAGCTGGAGCAGTTTCTCGGAC
GTGCACGGCGCCTCTGGACAGGATTAAAGTGTACTTGCAGGTACAAACAC
AAAGAATGGGAATCTCAGAGTGTATGCACATCATGCTGAACGAGGGCGGA
TCGCGGAGCATGTGGCGAGGCAATGGCATCAATGTGTTGAAGATTGCCCC
CGAAACGGCTTTCAAGTTCGCTGCCTACGAACAGATGAAGCGACTGATTC
GCGGTGACGATGGCAGCCGCCAGATGAGCATCGTGGAGCGATTCTATGCG
GGCGCAGCGGCAGGCGGAATTTCACAGACCATCATCTACCCCATGGAAGT
ATTAAAGACGCGCCTGGCGCTCCGGAGAACGGGACAGTATGCGGGTATTG
CCGATGCGGCGGTCAAGATCTACAAGCAGGAAGGAGTGCGCAGCTTCTAT
CGTGGCTATGTACCGAACATCCTGGGTATTCTGCCCTATGCCGGCATCGA
TTTGGCGGTATATGAAACCCTCAAGAGGCGGTACATTGCCAATCACGACA
ACAACGAGCAGCCCAGCTTTCTAGTGCTCCTCGCATGCGGCAGTACATCG
AGCACACTCGGGCAGCTCTGCTCGTACCCGCTGGCCCTGGTGCGCACTCG
GCTACAGGCACAAGCCGCCGAACAATTGCCAATCAAAGCGGAAAACGCAA
ATACCCCTGAGAGCAGCGACGCGCACAGCGGCGAGGAAACGATGACGGGC
CTGTCCGCAGATCGTGCGACAGGAGGACTGACGGGCTGTACCGCGGCATA
ACGCAAACTCTCAAGTCTGCGCGTGTCATCAGCTACGTGGTGTACGAATA
ACGAGTCCCGCCCTGGGCATAAAATGTCCGCAGCTTTCCTAGACATCGTT
TGGCCCCGGCAGGTAATGTCAATCCTAATCATATCTA
UFO08431.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32103-RC | 2060 | CG32103-RC | 419..1506 | 9..1078 | 4950 | 98 | Plus |
| CG32103-RE | 3836 | CG32103-RE | 1108..2072 | 132..1078 | 4335 | 97.7 | Plus |
| CG32103-RD | 1603 | CG32103-RD | 85..1049 | 132..1078 | 4335 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12404363..12404939 | 864..288 | 2885 | 100 | Minus |
| 3L | 28110227 | 3L | 12405000..12405161 | 292..131 | 795 | 99.4 | Minus |
| 3L | 28110227 | 3L | 12408110..12408232 | 131..9 | 615 | 100 | Minus |
| 3L | 28110227 | 3L | 12404144..12404283 | 1004..871 | 400 | 95.7 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:24:56 has no hits.
UFO08431.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:41 Download gff for
UFO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RC | 408..1502 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:06 Download gff for
UFO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RC | 412..1506 | 1..1078 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:35 Download gff for
UFO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32103-RC | 412..1506 | 1..1078 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:35 Download gff for
UFO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12405002..12405160 | 132..290 | 99 | <- | Minus |
| 3L | 12408110..12408239 | 1..131 | 96 | | Minus |
| 3L | 12404363..12404936 | 291..864 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:06 Download gff for
UFO08431.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12398102..12398260 | 132..290 | 99 | <- | Minus |
| arm_3L | 12401210..12401339 | 1..131 | 96 | | Minus |
| arm_3L | 12397463..12398036 | 291..864 | 100 | <- | Minus |
