UFO08433.5prime Sequence
1123 bp (1024 high quality bases) assembled on 2011-07-29
> UFO08433.5prime
CAGTCGACATGGCCATGTTAGAGGCGCGGCCATATAGGCCATTTAAATCC
AGTGAGGAATATCTGGAGGCCATGAGGGAGGATTTGGCCGAGTGGCTAAG
CACACTCTATCCAGAGCTGAGCATCAATGCCGATAACTTTATGGATCGTT
TGGACACGGGAGTAGCATTGTGCAAGCACGCAAATTATGTGAGACAGGCG
GCTGTGGATTATCTGGCACGGCGACAGGCCCGCAACAAATCGATGACCCG
CTCGATGACCTCGGGCCTGGCGGGTCCCATTCTGGCCATGGGCAATGTCC
ACTACCTTCCGGCAGCCAAGAGTGGCACCTTCTTTGCCCGCGACAATGTT
TCCAACTTTATAACCTGGTGCAGAAAGAGCCTAAAGATCATCGAGTGCCT
GCTGTTCGAAACGGACGATCTGATCATGCGCAAAAACGAGAAGCATGTGA
TCCTGTGCCTTCTGGAGGTGGCACGTCGGGGAGCCAAGTTTGGAATGTTG
GCTCCCATGCTGGTGCAAATGGAGCGACAAATCGATCGGGAGATCGCCGC
GGACATCAAGGCCAATGGAGCTGGCTGCTCGGAAAATGGCACCCAAACGG
ATGCACTGGAGACCGGAAATAGTAGTGCCGCCACAATGACGACAATAACG
ACGACCACAGTGGAAACGGATCTATATGATGACAGCGACGATTCGGAGAC
CGAGGATGATGGCGACCAGAATCCCGTGCTGATGTACGGACCACAGCCCC
AGATAATCACCAATGATCTGAAGAGCCTCGACGAAATGGTCAGAGATCTT
GTGGAGAAGTGCACATGCCCCTCACAATTTCCCATGGTCAGAGTGTCGGA
GGGCAAGTATCGTATTGGCGACACCAAAGTTCTCATCTTTGTGCGGATCC
TTCGTTCCCACGTGATGGTGCGCGTCGGTGGCGGATGGACACACTATCCC
ACTATCTGACAAGCACGATCCGTGCCGCTGCCGTGCCACATCGCAGCTCC
GTGCAGCTCGCTCATTCCCCGTCAGTCGCGATCAAACCGAGCACGGCATC
GAGCTCCCAGGCGCAGGTTAATATCAGAAGTCCACCTCCAGCAGCTCGAC
TGGTTTCCACACGTCCAATGCAA
UFO08433.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pigs-RC | 6318 | CG3973-RC | 783..1899 | 9..1111 | 5080 | 97.9 | Plus |
| pigs-RB | 6272 | CG3973-RB | 737..1853 | 9..1111 | 5080 | 97.9 | Plus |
| pigs-RA | 5401 | CG3973-RA | 783..1899 | 9..1111 | 5080 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6645042..6645340 | 492..790 | 1495 | 100 | Plus |
| X | 23542271 | X | 6644560..6644758 | 175..373 | 995 | 100 | Plus |
| X | 23542271 | X | 6630938..6631105 | 9..176 | 840 | 100 | Plus |
| X | 23542271 | X | 6644823..6644947 | 369..493 | 625 | 100 | Plus |
| X | 23542271 | X | 6648016..6648124 | 788..896 | 545 | 100 | Plus |
| X | 23542271 | X | 6648184..6648323 | 896..1029 | 435 | 95.7 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:25:43 has no hits.
UFO08433.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:50 Download gff for
UFO08433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pigs-RA | 772..1904 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:33 Download gff for
UFO08433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pigs-RA | 775..1907 | 1..1119 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:59 Download gff for
UFO08433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pigs-RA | 775..1907 | 1..1119 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:59 Download gff for
UFO08433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6648017..6648124 | 789..896 | 100 | -> | Plus |
| X | 6630930..6631105 | 1..176 | 97 | -> | Plus |
| X | 6644562..6644758 | 177..373 | 100 | -> | Plus |
| X | 6644828..6644946 | 374..492 | 100 | -> | Plus |
| X | 6645043..6645338 | 493..788 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:33 Download gff for
UFO08433.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6524963..6525138 | 1..176 | 97 | -> | Plus |
| arm_X | 6538595..6538791 | 177..373 | 100 | -> | Plus |
| arm_X | 6538861..6538979 | 374..492 | 100 | -> | Plus |
| arm_X | 6539076..6539371 | 493..788 | 100 | -> | Plus |
| arm_X | 6542050..6542157 | 789..896 | 100 | -> | Plus |
