UFO08435.5prime Sequence
1126 bp (1034 high quality bases) assembled on 2011-07-29
> UFO08435.5prime
CAGTCGACATGGGTCTACTGAGCGAGGGCAGTCCACTCTCCTGGGAGGAG
ACCAAGGCGCTGGCTGATCATGTGCGTGAGCATGGCGTCAATCAGTTCAT
CAACTTGTACCACAGACTCAAGGATCGCCAGGGTGACATATTGAAATGGG
GCGACGAGGTGGAGTACATTATTGTCAAGTTCGACGATGAACAGAAGGTG
GCACGTGTGGCGCTGCGCGCCCAGGATCTGCTGGCACAGCTCAATGAGAA
GGAACTGGCCGATCCCAATGGTGTCAAGTCGCTGTGGCGTCCGGAATACG
GAGCCTACATGATTGAGGGCACACCGGGCAAACCCTTTGGCGGTCTGATG
GCACACTTCAATCTGGTTGAGGCCAATATGCGCTATCGTCGCGAAGAGGT
CACCGAGCTGCTGGCCAAGGACGAGTGCGTTATGTCCATTACGAATTTCC
CACGACTCGGCGCACCAAATTTCACTTATCCGCTTGCCCAGCCGCGTCCC
GAGGATCCTCTCAGTTCAGCCCGCTCGCTCTACTTCCCGGATGAGGCCAT
CTTTCCGGGTCACCCGCGTTTCAAGACACTCACGCGTAACATTCGCAAGC
GACGCGGCGAGAAGGTGTCCATCAAGCTAAAAGTTTTCAAGGACACAAAG
ACGAAGCTACCGGTGGAGGGTGCTCCGCCTGGCGAACCGGATGTGGTGCT
CCTGGACGCCATGGGCTTCGGCATGGGCTGCTGTTGCTTGCAGCTCACCT
TCCAGGCCTGTAACATTACGGAGGCGCGTCGCCTCTACGATCAGCTGGCT
CCCCTCTGTCCGATCATGTTGGCTCTGACGGCCGCTTCGCCCATTTACAG
GGGCTATCTAACCGAATCAGATTGTCGATGGGAATGTGATTAGCTCCTCG
GTGGAATGCCGCACGGAAGAGAACGCGGACTGGCGCCGCTGGATCAGCAA
AAGTTCAAGATAGCCAAGTCGCGAATACGATTCGATTGACCTCGTATTTG
TCGCCGGAGGGGAGCCAAATATAACGATGTACCGCTCCCATACGATGAGA
CGTTCTATCAGCGTCTGGTGAAGGGCGTTATCGATCCATCTGTGCCAGCA
TTTGGCCAATTTGATTTACGCGAACC
UFO08435.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gclc-RD | 3231 | CG2259-RD | 128..1242 | 9..1123 | 5165 | 97.9 | Plus |
| Gclc-RC | 4238 | CG2259-RC | 734..1848 | 9..1123 | 5165 | 97.9 | Plus |
| Gclc-RB | 3145 | CG2259-RB | 42..1156 | 9..1123 | 5165 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8105268..8105892 | 633..9 | 3125 | 100 | Minus |
| X | 23542271 | X | 8104744..8105195 | 1086..632 | 1895 | 96.9 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:24:42 has no hits.
UFO08435.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:38 Download gff for
UFO08435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclc-RB | 33..1137 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:56 Download gff for
UFO08435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclc-RB | 33..1137 | 1..1104 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:26 Download gff for
UFO08435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gclc-RB | 33..1137 | 1..1104 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:26 Download gff for
UFO08435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8104721..8105193 | 634..1106 | 95 | <- | Minus |
| X | 8105268..8105897 | 1..633 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:56 Download gff for
UFO08435.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 7998754..7999226 | 634..1106 | 95 | <- | Minus |
| arm_X | 7999301..7999930 | 1..633 | 99 | | Minus |
