UFO08436.5prime Sequence
1118 bp (936 high quality bases) assembled on 2011-07-29
> UFO08436.5prime
CAGTCGACATGTCTACCTTTGGCGCTGAAGTGGATCAGGTTTGGCCAGCG
GTCACCGGTGATTCCCCGCATCTCACTAATTTCGGACGCAAATTGCTGAA
GGATTGCCGCCAAGTGCAGAAACCAATCGGAGGATACGAAAATTTGGGCA
ATGTGATTAAATTGTCCGCGGAGTTTCCGCTGGAGTTCGGCGTGAACAGT
GTCAAAGTATACCGGCAATCTCCATCGCGGCTTGCCCGGATAAATGAGGA
AGTGGCATCCGCCTATCCATTGATACACGAACGTACATTGGGCCTCTACT
TGCAGTACTTGGAGCACAAGTGTCGTTGGGGCAACGCGGTGGAAAAGCCC
ATCTACCGGAATTTATCGCTATGCGGATTTGTGCAACGTCTGCTGGTAAA
GCGTTGCGCCAGCTTCTTTGCGCGGAACGACAAGTACCTGCTGGTGAGCG
GAGAGTCCGGGGCCAGTGGCTTCGAAGCCGTGGGTACTCGGGAGGAGAAG
GCGCCTCTGGTGCTGGCCAACGTGCTCAGCTATGACGATATCAAGCTCTC
CGCCCTGCTTTCCGTGAGCTCCCGCACGGAGTTTGTCAATGAGGGCGAAC
GAACCAATTGCGGTCACGTTGATCTGAACACGAAAACTTTGGAACGTCAC
GGGGTTATTGTGGGCATGATTGGAGCCCGTCTGTCGCGACGTAATCTAAT
GGAGTTCCAGGACATTGTAATCGCACGTCAACAAAATACGCGTGAAAAGG
GGCTACGGAAATGGCATTGGATGAGCCGGCTACCACGCGTGATGAGGACT
ATCGACGACTGTGGCGCGAGTTCTATGCCACACGGGATCTCATCCACGGC
CAGCAGTCATTGACAATCAGCGTTTCGAACATCCAAAACAAAATGGACGT
GGTTCCGACATCTGGTGATGAGCCGCGTTACCCCATCAGCTTCGACATGC
TGCTGCTGGAAGGCAAAGGCAAGGCCAAAACCGCGTGAAAAGCTGGCGAT
ACATCCATGTGGTGGGGCTTCGGCTTGGGCGTGTGGAAAGCAACAAAACA
GCCGGAGCGCCATTCTCCTGAGAAACCTTTCAACACGGTATGCGCACGCT
GGGGAACAGGGCTCATAT
UFO08436.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:24:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2909-RA | 2018 | CG2909-RA | 154..1252 | 8..1110 | 4785 | 96.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10327065..10327841 | 330..1110 | 2825 | 93.6 | Plus |
| X | 23542271 | X | 10326617..10326794 | 8..185 | 890 | 100 | Plus |
| X | 23542271 | X | 10326857..10327004 | 184..331 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:24:45 has no hits.
UFO08436.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:39 Download gff for
UFO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 140..1251 | 1..1118 | 95 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:30:59 Download gff for
UFO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 147..1258 | 1..1118 | 95 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:28 Download gff for
UFO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2909-RA | 147..1258 | 1..1118 | 95 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:28 Download gff for
UFO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10326610..10326794 | 1..185 | 97 | -> | Plus |
| X | 10326859..10327003 | 186..330 | 100 | -> | Plus |
| X | 10327066..10327847 | 331..1118 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:30:59 Download gff for
UFO08436.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10220892..10221036 | 186..330 | 100 | -> | Plus |
| arm_X | 10220643..10220827 | 1..185 | 97 | -> | Plus |
| arm_X | 10221099..10221880 | 331..1118 | 94 | | Plus |
