UFO08438.5prime Sequence
1160 bp (1065 high quality bases) assembled on 2011-07-29
> UFO08438.5prime
CAGTCGACATGAAACGGACATACTTGTTGCTCTGCCTGAGTCTCCTCACC
TGCAATGTGGCCAATTCGGCATACCTGCGTCCAATCGATCTTAACCAGCT
AGCCAAGTCCTCCAACCTTCAGCAGCAGCAGCAACAGCAGCTGCGTGGCG
CTTTGAACCGAGATGATAACAACGATGACGATGATGCCACCACCTTGGCA
CCCAATTCCAACGAGGATTACGACACTCGTCCCCAGTACAGTTTTGCCTA
CGATGTGAGGGACTCGCTGACTGGCGATGACAAGCGGCAGGAGGAGAAGC
GCGATGGCGACCTGGTCAAGGGTCAGTACTCCCTGATCGAACCCGATGGC
ACCCGTCGCATTGTGGAGTACACGGCCGATGATGTGAGTGGCTTCAATGC
CATTGTGTCTAAGCAGCGTCTGGATGAGCAGCAGCAGCAAAGGCTCTCCG
CCTCCACTTCGTCCCGTTTCAACAGCCTCGAGGAACTGCAGACCCGTCTC
ACCGCCCAGGCCATTGCGGAAGCCCAATCTCTGGTGGAGGCCCAACAGGC
TAGCCAACTGCAGCTGGAGGCGCAGAATCGTCGAGAATCGGAAAACCAGG
CACGCAACCAAGCCCAACAGCTCATGGAACAGTTCCAACAACAGGTGCAA
CAGCAGGAGCAGCAGCGTCTGCAGCAGGAACAACAATTGAGGGATCTGCA
GCGCCTGCAGGAGCAACGAGATCGCGAGGAGCGTGATCGTGAGCAGCGGG
AGCGGGAGCAGCGTGAGCGGGAACAGCGCGAGCGCCAGCAGCGGGAACAG
GAACTCCGGGAACGGGAGCTGCGCGAGCGCGAACTCCGTGATCGTGAACT
CCGTGATCGTGAACTCCGGGATCGGGAACAGCGTGATCGGGAGCAGCGTG
ACCGCGAGGATCGCCGCCAGCAAGCGGAGCGTCGTCAGAGTCAGACCAGC
GATTGCTCGACCAGCAGACCCTACTCCTGGCCCAAGCCTGCCCAGCATTC
AGGCCACCGTGGTCCTCCCATCCACCCACTTTGCTCGCCACCCGCCTGCC
CGTCAGCACACACAGGCTCGTCGAGACTACCACTCTGCCTGACAGACGCG
ATCTGGAGGCTGCGCGTTGCATGCCGCATTCATTATCGATCGCGACTCCA
TCGCGTGTAA
UFO08438.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cry-RB | 2261 | CG16963-RB | 106..1215 | 8..1110 | 5275 | 98.8 | Plus |
| Cry-RA | 1886 | CG16963-RA | 106..1215 | 8..1110 | 5275 | 98.8 | Plus |
| Ccp84Ag-RA | 1097 | CG2342-RA | 221..313 | 288..380 | 225 | 82.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:24:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11944985..11946028 | 17..1059 | 5075 | 99.7 | Plus |
| 3R | 32079331 | 3R | 6687163..6687255 | 288..380 | 225 | 82.8 | Plus |
| 3R | 32079331 | 3R | 6689809..6689974 | 373..208 | 215 | 75.3 | Minus |
| 3R | 32079331 | 3R | 6693017..6693155 | 212..350 | 215 | 77 | Plus |
| 3R | 32079331 | 3R | 6691322..6691424 | 350..248 | 185 | 78.6 | Minus |
Blast to na_te.dros performed 2014-11-26 17:24:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3279..3344 | 642..710 | 140 | 71.4 | Plus |
UFO08438.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:42 Download gff for
UFO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 87..1217 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:08 Download gff for
UFO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 99..1229 | 1..1120 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:37 Download gff for
UFO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cry-RA | 99..1229 | 1..1120 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:37 Download gff for
UFO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11944985..11946099 | 17..1120 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:08 Download gff for
UFO08438.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11944985..11946099 | 17..1120 | 98 | | Plus |
