UFO08440.5prime Sequence
1141 bp (1049 high quality bases) assembled on 2011-07-29
> UFO08440.5prime
CAGTCGACATGCTGCTCAGCGAGACCCATTTCTGGACCACGTTGCGCGAG
GATGTGGTGCGGATCAAGAGCCAGGACCTGGGCGCCTTTCGCTACCTCAG
GCAGCGCGACAAGGAGCAGGAGCAGCAGGACCTCGCCTGCCTGGCCAAGC
GAGACTATACGGAGCGTCGCAATGGACTGGCCGTGCTGAAGAACTCTGGT
CGCAAGTCCACCGGCCGCTTGAAGGACAACCTCAAGAAGCTGGAGGACCT
GCTGCGCCAGCACAGGATCATCCACTCCGAGTGGCAGGACGCGGCGCAGG
TGCTGCTCCTCTTCTCACACGGCCTGATCGCCCACATCTGCGTGGACATC
TACACGGGCGACATTCTGCGCATGGTCTTCGAGAAGTACCTGGTGGGCAA
GCTCGCCTCCGAGGTCATTACGGATGCTTTTTTCACCCGTTCCCACATCG
TCTTGGCCTACAATACCAACCAGCTGACGGTGGTGCATCTGCAGAGGCCT
AATGCTCGCTCCCAGGGACCGGAGAAGATCGCCAATATGGATCCGCGCAT
CTTCCACGTGATCATACCGGGCGCCACAGAGCGCAAACTATCCCGCCACC
TCACAGTTAACGCCAGCTTCGATCTGTTCGTGGTTTGGACGCAGTCCTCG
CAGAACGAGGTGTATCCCTGGAGGCCAACGATAAGGGACCAAGATCGTGC
CAACATACATGTGTTCAAGATCAAGGGCTTGCAGCTGGAATCGATTGCCT
ATTGCTGGTCGGAGAACGATCCGCTGTGCGTGGGACTTCCTGCGAAGCAG
CGAGAGCCAGATCATCACCCTGGAGCAGAAGGTTTCCCGCAAGGGCGACA
TAAGCGCAGAATCTGCTCCTACGAACTGGCCGCCGGCAAGATGCAGCGCA
CCGCCATTACCTCCATTCAATGGGCGCCCAGATCTGCTCTTTGCCTTCAG
CCCCGACAGGAGAAGCTCTTCCTGGGCAGGCGTCGATCGCATATCTGCCT
GCACGACTGGTCCAGCAGTCGACAAGTACGCAACCAGAATGGAGGATCGG
TGCCCATCAATGCGCCTGGGCACTGCCAACCTCCGCCAATGCCTGGCGGT
GACCACGAGCGATCGGTGCGTGCAATGTCTCGACTGGGGCG
UFO08440.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| frtz-RD | 3586 | CG17657-RD | 296..1420 | 9..1134 | 5030 | 97.4 | Plus |
| frtz-RB | 3303 | CG17657-RB | 296..1420 | 9..1134 | 5030 | 97.4 | Plus |
| frtz-RA | 3601 | CG17657-RA | 296..1420 | 9..1134 | 5030 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 1715139..1715556 | 426..9 | 2090 | 100 | Minus |
| 2L | 23513712 | 2L | 1714173..1714474 | 727..426 | 1510 | 100 | Minus |
| 2L | 23513712 | 2L | 1713816..1714118 | 1025..727 | 1125 | 97.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:25:47 has no hits.
UFO08440.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:51 Download gff for
UFO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 306..1326 | 9..1025 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:35 Download gff for
UFO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..1316 | 9..1025 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:02 Download gff for
UFO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| frtz-RA | 296..1316 | 9..1025 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:02 Download gff for
UFO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 1714173..1714473 | 427..727 | 100 | <- | Minus |
| 2L | 1713816..1714117 | 728..1025 | 97 | <- | Minus |
| 2L | 1715139..1715556 | 9..426 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:35 Download gff for
UFO08440.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 1714173..1714473 | 427..727 | 100 | <- | Minus |
| arm_2L | 1713816..1714117 | 728..1025 | 97 | <- | Minus |
| arm_2L | 1715139..1715556 | 9..426 | 100 | | Minus |
