UFO08442.5prime Sequence
1117 bp (1012 high quality bases) assembled on 2011-07-29
> UFO08442.5prime
CAGTCGACATGTCGGAACAATGGGAGGTGGTCTCCAAGTCGCGCAAGCAA
AAGAATCTGGACAAGAAGGTGTCTGCACACAACGAGCAGAAGCGCATCGC
GGCCCAGTTGCCCAAACTGGAGGAGCTGTTGCCAACTCAGCGGTATCGCA
ATTTGTTCGGCAGCAGCAACAACAACAACAGCAAGTCCCATTCCCCTGCG
AAATCTAGTTCAAGTGCCTCATCTTCCTCAAAAGCCAATAAGTCGCCAGT
TAAAAAGCACACCGCAAAGAATGCCTCTACCCAAAAAAGGACCACGTCGG
CAGCCGCATCGAAGCCAAAGACTCTGGAGCTGGCCTTGAGGAACATCACC
CGGGATGATTTTGCTGCCCAACTGGAGCAGGTGAAGCTCAGTTGTCCTGG
CTCCGAGCTGCGCTGGTTAAGCCATATTGCGCTATACTTCAATGAAGCCT
TGTCCTATGACTGCGATCCCATCTTCTCCGGCCGCTCGGCTCAGTATCCC
AGCAATTTGGCCAGCGCCTCGCTCAAGTACTCAATTGTGGAGTTTCTGGG
CAGTGTGGGCGAGCAAAACCTGGAGTATTTCTTCTACTCCCTGCTGGATA
GCATGTCAACGGATCTAAACAACAATCAGACAGTGGCAGGTTACAAGCTC
ATCCTACAGTTGATCGGTCAAAACTGGCCGAACATTTGTTCTAGGAACCT
GGCCAAGACTGCGTTGCTAAGGGAACTCCTATCAGAACCGTAGCAACATC
TGCCTGAGCATCCTGTGGGCAATTGGACAAGGTGGCTATCAGTCCCTAAA
CGAGGGCGTTCGCGTGTGGCAGAACCCTGATGCTGCCCAACCTGGAGCTA
AAGCAGTACACCAAGTTTGTGGTCGAGTATATGGAGCGGGCTCTGAGTGC
AGCAGCTGTCCAGAAGACGCGGATCCTCTGCAGATCAACCAGCAGGAGTT
CTTTGCCACTTACATGCGCTCAATGCACCCTATACACTGCCCAGAATGGC
AGCAAAGTCTGAAGCGTATGCGCGTTTGTTGCTCAACACTAATTTCACAG
TCTGTGAGCATGCAAACATATTCTTACGCCTCTTCAGGACAGCGCGATCA
GCAAACTATGGAATCGA
UFO08442.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG33129-RF | 2815 | CG33129-RF | 80..1167 | 7..1085 | 4965 | 97.9 | Plus |
| CG33129-RE | 2652 | CG33129-RE | 152..1239 | 7..1085 | 4965 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10968963..10969580 | 1033..422 | 2615 | 97.4 | Minus |
| 2L | 23513712 | 2L | 10969633..10969928 | 425..130 | 1465 | 99.7 | Minus |
| 2L | 23513712 | 2L | 10970002..10970124 | 129..7 | 615 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 17:25:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6801 | 104..183 | 123 | 63 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6875..6959 | 158..249 | 119 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1048..1161 | 66..183 | 119 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6780 | 80..183 | 116 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2295..2329 | 148..183 | 114 | 83.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1582 | 158..183 | 112 | 92.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6759 | 158..183 | 112 | 92.3 | Plus |
UFO08442.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:52 Download gff for
UFO08442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33129-RE | 148..1211 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:37 Download gff for
UFO08442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33129-RE | 148..1211 | 1..1058 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:03 Download gff for
UFO08442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG33129-RE | 148..1211 | 1..1058 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:03 Download gff for
UFO08442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10968963..10969576 | 426..1033 | 97 | <- | Minus |
| 2L | 10969633..10969928 | 130..425 | 99 | <- | Minus |
| 2L | 10970002..10970128 | 1..129 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:37 Download gff for
UFO08442.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10968963..10969576 | 426..1033 | 97 | <- | Minus |
| arm_2L | 10969633..10969928 | 130..425 | 99 | <- | Minus |
| arm_2L | 10970002..10970128 | 1..129 | 97 | | Minus |
