UFO08444.5prime Sequence
1110 bp (1009 high quality bases) assembled on 2011-07-29
> UFO08444.5prime
CAGTCGACATGAGCCGCCAACACCAGCGGCACCACCAGCAGCATCACCAC
CTGCCGCCGCACCAGCAACCGCAGCAGCAGATGCCGCAACAACAGCAGCA
GCTGACGGCGCAGCAGCAGCAACAACAGCAGCTGCTGATGGCGGAGCACG
CGGCGGCCGCGGAGGCGGCGGAGCTATTCGACCTGCTGTGCGTGGCCACA
ACGATGCGCCAGATCCTGGCGCTCCATCGGGCCATGTGCGAGGCTGTGGG
ATTGAGACCCTCGCCTCTGAACGACTTCTACCCACGGCTAAAGGCCAAGG
TGCGTTCGTGGAAGGCGCAGGCCCTGTGGAAGAAGTTCGACGCCAGAGCT
GCCCATAGAGTCTACGGCAAGGGAGCTGCCTGTACTGGCACACGCGTCCT
GGTCATCGGAGCAGGGCCCTGTGGACTGCGCACCGCCATCGAGGCCCAAC
TGCTGGGCGCCAAGGTGGTGGTGCTGGAGAAACGCGATCGCATCACCCGG
AACAATGTGCTCCATCTGTGGCCATTCGTCATCACGGATCTGCGCAACTT
GGGCGCAAAGAAGTTCTACGGCAAGTTTTGCGCCGGCTCCATCGATCACA
TCTCCATTCGGCAGCTGCAGTGCATGCTGCTCAAGGTGGCGCTGCTCCTG
GGCGTAGAGATCCACGAGGGAGTCAGTTTTGATCACGCTGTAGAGCCCTC
TGGCGATGGCGGCGGATGGAGGGCAGCTGTTACTCCCGCAGATCATCCTG
TATCTCACTACGAATTCGATGTGTTGATCGGAGCGGATGGCAAGCGGAAT
ATGCTGGACTTTACGAGGAAGGAGTTCCGCGGGAAGCTGGCCATCGCTAT
TACAGCGAACTTTATCAACAGAGACGGAGGCGGAGCTAAAGTAGAGGAGA
TCAGTGGGGTGGCTTCATCTCAACCAGGCCTTCTTCAGAGCTGTACGGGA
GGACGGCATCGACTGAAAACATCGTCTACTACAGACGAGACGCACTACTT
CGTGATGACGCAGAGCACAGTCTATTGGACAGGGCGTTATACCGAGGAAT
TGGCCGATCCCGGGCGAGCTTCTCGCCTGCCAATGGTGATACAAAAGCCT
GCCAGACATG
UFO08444.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mical-RL | 15345 | CG33208-RL | 233..1336 | 9..1093 | 4890 | 97.2 | Plus |
| Mical-RK | 15264 | CG33208-RK | 185..1288 | 9..1093 | 4890 | 97.2 | Plus |
| Mical-RQ | 10116 | CG33208-RQ | 260..1363 | 9..1093 | 4890 | 97.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10020369..10021382 | 1010..9 | 4550 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:25:57 has no hits.
UFO08444.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:53 Download gff for
UFO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RG | 28..1137 | 1..1093 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:40 Download gff for
UFO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RK | 177..1288 | 1..1093 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:09 Download gff for
UFO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mical-RQ | 252..1363 | 1..1093 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:09 Download gff for
UFO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10020279..10021386 | 1..1093 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:40 Download gff for
UFO08444.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5846001..5847108 | 1..1093 | 96 | | Minus |
