UFO08446.5prime Sequence
1106 bp (1032 high quality bases) assembled on 2011-07-29
> UFO08446.5prime
CAGTCGACATGGCCGCCACCGATGGCCAAATCATATTGGCCGCCTCCCGA
TTCGGCGATGCCACGCCCGTTTACCTGCGCGACTTTTCCAAGCAGCCGCT
GCCGGCGGTGGCCAAGATCATCAAGGGCCAGCACCAGGCGCTGGGGGTGC
CCACATTGTCGGCCCCATCTCTGCAGAGCACCGCCCTATTTCTGAGCGCC
GGCAAGAAGTACCAGATCCTGGCCCAGCCCATCAAGATCAAGGAGGGTCG
CAAGCCCACCAATGTGGGCGCCAAGGTGCTCATCCCGGAGACCTACGGCG
GCTACTTCGAGCTCCTCAGCGAGGATGGTCGCTCCACGCGATGCATTGAC
TCCGTGCTGGAGCTCTCGCGACGGCGAAACGCCCGCGTCCTGGTGCGGGA
GACCTTTCGATGCCAGCAGATGAACCGGACTATCCACGCCGGCGAACTGC
TGACCACCATGAACGACAACGGGAAGTACCTGCAGTGCAGGAACATCAAG
GACGAGATCATCAATCTGCCACTCGATACCAAAGCCAAGTTCTCGCCGAT
CGCCAGGGAGGACAGCATCAGCGGTGTCCACACCGTCAAGAATCTGCTGC
TCAAGCGGATGCCAGTCATCGTGAGACTCGTTCACGGCAGTGCGCCCAAG
GGTCTGAAACAGCCATTTGTGCCCGAACTGCGACTGCTGGGCTGCGTGGA
GATCGACAGGATATTCGCGTTGCCACTGCAAAAGGACACGGATCTGGTGC
CGGTGCCGCTGAATGCCAAGATCAAGCTGCAGCGAGCCAAGAACATGGAG
CAACTGGAGCACTTCATCGAGTACTCGCGATTCCTGGACAAGGCGCAGCG
ATTGCTGGCCGATGCACGCGATCGCCTGCAGATCGTCGATCTCAGCTGAG
CGAGATGAGAAGAAAGACTCCAAGTTCATAGTCGCAATGGGGGCAGGTTG
CCGGTGGTCATGCTGCCATCTGCAGCGGGAATGGCCAGTGACTGCGAAAA
GTGGTTATGTGCTGCCCAGAGTGCCAGTGTGATTCGTGTCAAGCAACAGC
AGCAGCACTGACAGCACGGAGATTGCCGGAAGGAGTACAAACGAAGAATC
GATCTA
UFO08446.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sano-RF | 4279 | CG12758-RF | 799..1893 | 5..1090 | 5070 | 98.3 | Plus |
| sano-RE | 4614 | CG12758-RE | 1134..2228 | 5..1090 | 5070 | 98.3 | Plus |
| sano-RD | 4279 | CG12758-RD | 799..1893 | 5..1090 | 5070 | 98.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18955506..18956126 | 5..625 | 3090 | 99.8 | Plus |
| 2R | 25286936 | 2R | 18956255..18956676 | 624..1038 | 1715 | 97.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:00 has no hits.
UFO08446.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:54 Download gff for
UFO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RC | 1043..2131 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:43 Download gff for
UFO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RC | 1030..2118 | 1..1080 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:11 Download gff for
UFO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sano-RD | 796..1884 | 1..1080 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:11 Download gff for
UFO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18955503..18956126 | 1..625 | 99 | -> | Plus |
| 2R | 18956257..18956721 | 626..1080 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:43 Download gff for
UFO08446.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14843008..14843631 | 1..625 | 99 | -> | Plus |
| arm_2R | 14843762..14844226 | 626..1080 | 96 | | Plus |
