UFO08449.5prime Sequence
1132 bp (1017 high quality bases) assembled on 2011-07-29
> UFO08449.5prime
CAGTCGACATGAAAGTCAAAGTGGAGCGCACAACGAAAAAGCCCGCCATC
AGAAAGCCCGAGGATCCAGATCCGGCGGAAGAGGACAGGGTCAAGATGGT
GCAGGATGACCCAGAGGACCAGGAGAACCAGGCGGTGGATGAGGAGGAGC
TGGACTTTCTGCCCGCCGATCTAAGCGCTGCGATATCGACGGCGACAACG
AAAATAGCAACACCGACGCGCAATCTTATCCTCGGCAACTTTGAGACCGG
CCAGAGTGTTCTCACACTGACGACGCCCACGTTGACGCCGACCACCACGC
GCAACATCGAGGACACACTGGGCCACTTGCTCTCGGACACGCAGACCGAT
CGTGTGGCTGGTTGCGCGGGATTTGCAGTGCCAAAGGTGCTACCCAATGC
CATTGATGTCCTGGGCATGGGTATTCCCACCGGTGTTTCGTCGCTCCCAC
TTCAGCAGACATTCGATTTGAGCCTGGGGCAGGGCAGCGAGTCCGAGGAC
TCCAACGCTTCGTACAACGATACGCAGATGAACGAGGAGCAGGACACGAC
CGATACTTCAAGTGCCCATACGGACAGCACCTCGTACCAAGCTGGCCACA
TCATGGCGGGCAGCGTGAACGGCGGCGGTGTCAACAACTTCTCCAATGTC
CTGGCCGCCGTGAGCTCTAGCCGCGGATCGGCGTCGGTGGGCAGCAGCAA
CGCGAATACCTCAAATACGCCGGCTCGTCGTGGCGGTGGCAGACGCCCCA
ACCGGTCGACGAACATGACCCCGGAGGAGGAGCAGAAGCGGGCCGTGCGC
CGGGAGCGGAACAAACAGGCGGCGGCCCGTTGCCGCAAGAGGCGCGTGGA
CCAGACCAACGAGCTCACCGAGGAGGTGGAGCAGCTGGAGAAGCGGGGCG
AGAGCATGCGCAGGAGATCGAGGTGCTGACGAATAGCAAGAATCAGCTGG
AGTACCTTCTGGCCACCCACCTGGGCCACCTGCCAAAAGATTCGGCTCCG
GACATGCTGAGCGTTGTTCACCTGCAACGGTCCTGATTGCCCCGGCCCGG
GACTCTCTGATGCAGGAGCAGCGGCAGCCGGCCGAGCAGCCATTCCATCA
CAACAGCCACGACAGGCACAACGCGATATACC
UFO08449.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| kay-RA | 3585 | CG33956-RA | 709..1811 | 9..1115 | 5145 | 98.3 | Plus |
| kay-RG | 3738 | CG33956-RG | 1084..1964 | 231..1115 | 4035 | 97.9 | Plus |
| kay-RF | 4574 | CG33956-RF | 1920..2800 | 231..1115 | 4035 | 97.9 | Plus |
| kay-RG | 3738 | CG33956-RG | 709..930 | 9..230 | 1110 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29791787..29792339 | 559..1115 | 2140 | 95.9 | Plus |
| 3R | 32079331 | 3R | 29791393..29791720 | 231..558 | 1640 | 100 | Plus |
| 3R | 32079331 | 3R | 29773600..29773821 | 9..230 | 1110 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:03 has no hits.
UFO08449.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:55 Download gff for
UFO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 699..1790 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:45 Download gff for
UFO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 701..1792 | 1..1100 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:12 Download gff for
UFO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| kay-RA | 701..1792 | 1..1100 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:12 Download gff for
UFO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29773592..29773821 | 1..230 | 98 | -> | Plus |
| 3R | 29791393..29791720 | 231..558 | 100 | -> | Plus |
| 3R | 29791787..29792320 | 559..1100 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:45 Download gff for
UFO08449.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25599314..25599543 | 1..230 | 98 | -> | Plus |
| arm_3R | 25617115..25617442 | 231..558 | 100 | -> | Plus |
| arm_3R | 25617509..25618042 | 559..1100 | 96 | | Plus |
