UFO08454.5prime Sequence
1144 bp (1022 high quality bases) assembled on 2011-07-29
> UFO08454.5prime
CAGTCGACATGATGACGGGCACCGACGATAGTCCGTTGGTGGAGGAGGGC
GGTCCGAAAGCCAACCAGTACCGACTGACCATTTGGCACAAGGTCTCCAT
TTCCATGAACGAACCGGAAAACCTGAAACCACCTGCCAAATCCAACTTCC
GCCGTTATCTTCAGTGGATCCTAGCACCTGTCCTGACCGCCATTTCCGGT
CTGATCCTCTACTACCAAGGGCCTTGGTATGGAGTGGCCACGCTATATGC
CGCATTGATATCCATACTGCTGGTGCGTCCAGGATGGCGCTGGTTCTACA
TTGCAGCTGTTACCACACCCAGGGATACTGTAGCCCTCTTTGCCTACATC
CGTGTGCTGCTCTTCATTAAGCGCCAGGAGCGCAAGAACCTGAACATCGG
AGACATCTTTGAGTCAAATGTGGCCCGGCAGCCGGATAAACTGGCCATTG
TCAGTGAGTCCCAGCAGTGGACCTTCCGCCAGGTGAACGAGCATTCGAAC
CGGGTGGCCAACGTGTTCCACAGTCACGGCTACAAAAAGGGCGACGTGGT
GGGTCTGCTGCTCGAGAATCGCGCCGAATTTGTAGCCACCTGGCTTGGTC
TCTCCAAGATCGGCGTGATCACGCCGCTGATTAACACAAACCTCCGTGGA
GCCTCACTGCAGCACAGCATTACCGTGGGCCAGTGCACGGCGCTCATTTA
CGGCGCCAGTTTCCGGTCGGCCGTGATGGATATCGCCAAGGATCTGCCCG
CCCACGTCGGACTGTATCAGTTCAACGACGAGTCCAACCAGGAGGTGGTG
GCTTCCGAGGGCCTTAGCCAGGGACTGGCCCAGCAGTTGAACGGCCTTTC
TGGAGACGCGGCCAAGGATAAGTGCCGCCGGCGCTTCTCGGGCGGATCAT
CACGACAAGTTGGTCTACATCTACACGTCGGGCACACGGGCTTGCCCAGG
CAGCGTCATCACGCATTCTCGGTACTTTTCATAGCTGCGGCATCACTAAC
GCTGCTCAGGGATCAGATGTGTTCTATACTCCTGCCTATATTCACACCGC
TGGCGGATGATGACATGGCAGCTTACTCTTCGCTCACGTGTCATAAGAAA
ATTCAGGCTCGGTACTTTCGAACTGCCCGCTCAAAGTCACAGTG
UFO08454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44252-RB | 2538 | CG44252-RB | 134..1230 | 8..1082 | 4870 | 97.4 | Plus |
| CG44252-RD | 2651 | CG44252-RD | 330..1343 | 91..1082 | 4470 | 97.3 | Plus |
| CG44252-RE | 2745 | CG44252-RE | 424..1437 | 91..1082 | 4470 | 97.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23059352..23059999 | 332..974 | 2915 | 98.8 | Plus |
| 2R | 25286936 | 2R | 23059053..23059293 | 91..331 | 1205 | 100 | Plus |
| 2L | 23513712 | 2L | 10513191..10513446 | 705..450 | 620 | 82.8 | Minus |
| 2R | 25286936 | 2R | 23058381..23058467 | 8..94 | 420 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:06 has no hits.
UFO08454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:55 Download gff for
UFO08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30194-RB | 99..1179 | 8..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:48 Download gff for
UFO08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RB | 134..1214 | 8..1072 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:13 Download gff for
UFO08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44252-RB | 134..1214 | 8..1072 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:13 Download gff for
UFO08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23058381..23058465 | 8..92 | 98 | -> | Plus |
| 2R | 23059055..23059293 | 93..331 | 100 | -> | Plus |
| 2R | 23059352..23059996 | 332..971 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:48 Download gff for
UFO08454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18945904..18945988 | 8..92 | 98 | -> | Plus |
| arm_2R | 18946578..18946816 | 93..331 | 100 | -> | Plus |
| arm_2R | 18946875..18947519 | 332..971 | 98 | -> | Plus |
