UFO08455.5prime Sequence
1116 bp (1021 high quality bases) assembled on 2011-07-29
> UFO08455.5prime
CAGTCGACATGAGCAGCAACAACAACGCACCCGCATCGGCTCCAGACACG
GGCTCCACCAATGCCAACGATCCCATCTCCGGTTCGCTGTCCGTAGACAG
CAACCTGGTTATCATTCAGGACATGATTGATCTCTCGGCCAACCATCTGG
AGGGCCTGCGAACGCAGTGCGCGATCAGCTCCACGCTGACGCAGCAGGAG
ATTCGTTGCCTGGAGTCGAAGCTGGTGCGATACTTCTCCGAGCTGCTGCT
GGCGAAGATGCGGCTAAATGAGCGCATCCCGGCCAACGGGCTTGTGCCCC
ACACAACGGGCAACGAACTGAGGCAATGGCTGCGCGTAGTGGGCCTTAGC
CAGGGGACTCTTACCGCCTGCCTTGCTCGCCTGACCACTCTAGAGCAAAG
CCTGCGTCTCAGCGACGAGGAGATCCGTCAACTCCTGGCTGACAGCCCCA
GCCAGCGAGAGGAGGAGGAACTGCGACGCCTGACCAGGGCCATGCAGAAC
TTAAGGAAGTGCATGGAGTCGCTGGAGAGCGGTACTGCGGCTAGCAACAA
CGATCCAGAGCAGTGGCACTGGGACTCCTGGGACAGGCCCACCCACATTC
ATCGCGGCAGTGTGGGAAACATTGGACTGGGTAACAATTCAACCGCCTCC
CCGAGAACCCATCATCGCCAGCATGGTGTCAAGGGAAAGAATTCCGCTCT
GGCCAACTCCACCAACTTCAAAAGTGGCCGCCAATCGCCCTCAGCGACAG
AAGAGCTGAACAGCACACAGGGTTCCCAGCTGACTTTAACCCTTACGCCC
TCGCCACCCAATTCGCCCTTCACGCCTTCCAGTGGGCTGAGCAGCAGCCT
TAATGGAACACCACAGAGGAGTCGTGTACCCCGCCGCCAGCTAGAAAGCA
CCAGACCTTGCTGAGCAGAGTCATGTGCAAGTGGACGGGGAGCATTAGCC
CGCACGTTTGCCCACTGATCCAGCCCGATAGCACAGCTCCACAGCTCGAC
ATCTTTTGTGACCCAAATACTATGCAGCTCGAGAAGTCTCGACGTGCCTT
ATGGTGCATGCTCTCCGGGCGTGTCACGGTGGGCATGGTCATGCCAATCC
AGCATCGTTACAAGCC
UFO08455.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ksr-RD | 3354 | CG2899-RD | 270..1389 | 9..1109 | 4970 | 97.5 | Plus |
| ksr-RC | 5517 | CG2899-RC | 270..1389 | 9..1109 | 4970 | 97.5 | Plus |
| ksr-RB | 4559 | CG2899-RB | 270..1389 | 9..1109 | 4970 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5482670..5483637 | 971..9 | 4625 | 99.5 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:26:09 has no hits.
UFO08455.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:56 Download gff for
UFO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksr-RA | 245..1358 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:49 Download gff for
UFO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksr-RA | 266..1379 | 1..1099 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:15 Download gff for
UFO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ksr-RB | 266..1379 | 1..1099 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:15 Download gff for
UFO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5482528..5483641 | 1..1099 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:49 Download gff for
UFO08455.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1308250..1309363 | 1..1099 | 97 | | Minus |
