UFO08457.5prime Sequence
1146 bp (1034 high quality bases) assembled on 2011-07-29
> UFO08457.5prime
CAGTCGACATGAAGGTCATGGACGCTTTGCAATCTGGACGGAGAAAGCCA
TTACCAGTGGCTCTTCTATGCATCCTAGTCACTGTGTTCTGCGTCTTGGA
GTGCCATGGAGCTGACCTGACATCACCCACCAAGAAGTCCGCTCCCCTTC
GAATAACCAAACCACAGCCCACAAGTCAGCAGGCCAAGCCCATCAGTATT
ACCACAAGGGCCCCAACAACGGTGGCATCAACCACCGATGATGAAGTCTC
CAGCTCCGTCGATGGTCAGCTGGCCCCGCTCATCTCATCCACAACCGAGG
GACCCAGCAGTGGAACAACTGCCAGCTTAGTGCCGGAAATATGTCTCAAT
GGTCTGCAGTTGACGGTCAATAGTGCGGATGAGGGAACGGTTATACGGAA
GCAGGAGGAGTTTGTCAAGATACTCGAAGGAGATGTGGTGCTCAGTGTCT
TGACCAAGGACCCCGACTCCGCGTTGTTCGTAATCAATCGTGTGAACCAG
GCGAATCTTATAATGGCAGACTTTGAAATTGGAATTCGCGCCATCAGCAT
CGACAACGCCAGCTTGGCAGAGAACTTGCTTATTCAAGAAGTTCAGTTTC
TGCAGCAGTGCACGACGTACTCGATGGGCATATTCGTTGACTGGGAGCTG
TACAAACAACTGGAGTCTGTTATCAAGGACTTGGAATACAATATCTGGCC
AATACCGGGAACGCGGGCGCACCTCTTTCCCAAAGTTGCGCACTTGCTGC
ATCAAATGCCTTGGGGCGAAAAAATCGCATCCGTGGAAATAGCAACCGAA
ACGCTGGAGATGTACAATGAATTCATGGAAGCCGCTCGCCAGGAGCACAT
GTGCCTCATGCACTTCAAAAGTGACGATAATGTTTACATAATGTTTGGCA
ATAGCTAGCTAGTCACTTCAAGGAAAACGGCACTCTGTTTTCGTGCCCAC
CGATAGAACGGACGATGAATTTCTGGCAGACTACAAACAGAGCTTTTGTC
CTAATGGAAACGAATGACTGACACCGCCGTTGATTGACGCCCACGCCCAC
CGCTTTGGACGAAATCCTGAATCGGAGAAGTGGTTTACCATCGCGAGTCT
GGAACTTTGCCGGTTCCAATCGAACTGATGAACTGGCGTGCGCCGG
UFO08457.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| boss-RA | 3013 | CG8285-RA | 173..1318 | 9..1143 | 5190 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25963918..25964390 | 60..532 | 2365 | 100 | Plus |
| 3R | 32079331 | 3R | 25964448..25964898 | 531..979 | 2155 | 99.6 | Plus |
| 3R | 32079331 | 3R | 25963564..25963615 | 9..60 | 260 | 100 | Plus |
| 3R | 32079331 | 3R | 25965089..25965187 | 1041..1137 | 235 | 84.8 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:13 has no hits.
UFO08457.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:57 Download gff for
UFO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boss-RA | 165..1320 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:52 Download gff for
UFO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boss-RA | 165..1320 | 1..1146 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:18 Download gff for
UFO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| boss-RA | 165..1320 | 1..1146 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:18 Download gff for
UFO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25964449..25964898 | 532..979 | 99 | -> | Plus |
| 3R | 25963556..25963615 | 1..60 | 93 | -> | Plus |
| 3R | 25963919..25964389 | 61..531 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:52 Download gff for
UFO08457.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21789278..21789337 | 1..60 | 93 | -> | Plus |
| arm_3R | 21789641..21790111 | 61..531 | 100 | -> | Plus |
| arm_3R | 21790171..21790620 | 532..979 | 99 | -> | Plus |
