UFO08458.5prime Sequence
1117 bp (998 high quality bases) assembled on 2011-07-29
> UFO08458.5prime
CAGTCGACATGAATATTGTCGGGGAATATGAATACAGCTCCAAGGATATG
CTGGGCCATGGCGCCTTTGCCGTCGTCTACAAAGGACGTCATCGCAAGAA
ACACATGCCGGTGGCCATCAAGTGCATCACGAAGAAGGGACAACTGAAGA
CGCAGAATCTGCTCGGCAAGGAGATCAAGATCCTGAAGGAGCTCACCGAG
CTGCACCATGAGAATGTGGTGGCTCTGCTGGACTGCAAGGAGTCCCAGGA
TTGCGTCAGCCTGGTCATGGAGTATTGCAATGGCGGCGACTTGGCGGATT
ATCTGAGTGTCAAGGGGACGCTCAGCGAGGATACCGTTAGACTCTTCCTC
GTGCAACTAGCTGGTGCTATGAAAGCACTTTATACCAAAGGAATTGTGCA
TCGTGATCTCAAGCCACAAAACATTTTGCTATCGCACAATTATGGCAAAA
CATTGCCAGCTCCATCGAAAATAACCCTGAAAATTGCGGATTTTGGGTTT
GCGCGATTCCTGAACGAGGGCGCCATGGCAGCCACTCTGTGCGGCTCTCC
CATGTATATGGCGCCCGAGGTGATCATGTCGCTGCAGTACGACTCCAAGG
CGGATCTCTGGTCGCTGGGAACGATTGTCTACCAGTGTTTGACTGGCAAG
GCGCCATTCTATGCACAAACGCCCAACGAACTGAAGTCCTACTACGAGCA
GAATGCTAACCTGGCACCAAAAATTCCAAGTGGCGTGTCACCGGATCTGA
GGGATCTGCTGCTGTGCCTGCTGCGCCGCAACTCCAAGGATCGCATCTCG
TACGAGAGCTTCTTTGTTCACCGCTTCCTTCAGGCAAGAATGCGGCCGTG
TCGCCAGTTGACATGCCACCGCTTGCGGACACCACCTGCCAAGGCCAAGA
GCCCTTGCAGCAGCAGCTGGAGCAGAACTGAGCTGGTCAGCTGGCCGAGC
ACAGCAGAGAAGCGCGAGGAGCAGAGCCCAGAGACGAGAACACGGTGTCG
TGTGCCATCGCATTTGTGCACCCATCACACGTAGTGTCTGGTGCGACAGT
GGAAACCACAGCGTCTGCAGCTCCCAGAGACTCGGATGACTTGGGCTGAT
CAGACCTTCCGAGAACG
UFO08458.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Atg1-RA | 4088 | CG10967-RA | 673..1784 | 9..1092 | 4740 | 96.6 | Plus |
| Atg1-RB | 3446 | CG10967-RB | 673..1526 | 9..861 | 4215 | 99.6 | Plus |
| Atg1-RB | 3446 | CG10967-RB | 1579..1844 | 854..1092 | 550 | 86.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12797683..12797858 | 272..97 | 880 | 100 | Minus |
| 3L | 28110227 | 3L | 12787793..12787954 | 721..560 | 810 | 100 | Minus |
| 3L | 28110227 | 3L | 12788249..12788378 | 486..357 | 650 | 100 | Minus |
| 3L | 28110227 | 3L | 12787593..12787733 | 861..722 | 625 | 97.9 | Minus |
| 3L | 28110227 | 3L | 12804355..12804444 | 98..9 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 12788541..12788630 | 360..271 | 450 | 100 | Minus |
| 3L | 28110227 | 3L | 12788015..12788090 | 561..486 | 380 | 100 | Minus |
| 3L | 28110227 | 3L | 12787412..12787540 | 974..854 | 235 | 91.5 | Minus |
Blast to na_te.dros performed 2014-11-26 17:26:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 672..750 | 747..824 | 113 | 62 | Plus |
UFO08458.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:57 Download gff for
UFO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg1-RA | 665..1685 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:54 Download gff for
UFO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg1-RA | 667..1687 | 1..1007 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:19 Download gff for
UFO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Atg1-RA | 667..1687 | 1..1007 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:19 Download gff for
UFO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12787597..12787733 | 722..857 | 98 | <- | Minus |
| 3L | 12787793..12787953 | 561..721 | 100 | <- | Minus |
| 3L | 12788016..12788089 | 487..560 | 100 | <- | Minus |
| 3L | 12788249..12788374 | 361..486 | 100 | <- | Minus |
| 3L | 12788541..12788628 | 273..360 | 100 | <- | Minus |
| 3L | 12797683..12797856 | 99..272 | 100 | <- | Minus |
| 3L | 12804355..12804450 | 1..98 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:54 Download gff for
UFO08458.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12780697..12780833 | 722..857 | 98 | <- | Minus |
| arm_3L | 12780893..12781053 | 561..721 | 100 | <- | Minus |
| arm_3L | 12781116..12781189 | 487..560 | 100 | <- | Minus |
| arm_3L | 12781349..12781474 | 361..486 | 100 | <- | Minus |
| arm_3L | 12781641..12781728 | 273..360 | 100 | <- | Minus |
| arm_3L | 12790783..12790956 | 99..272 | 100 | <- | Minus |
| arm_3L | 12797455..12797550 | 1..98 | 95 | | Minus |
