UFO08459.5prime Sequence
1149 bp (1024 high quality bases) assembled on 2011-07-29
> UFO08459.5prime
CAGTCGACATGGATAGTTTAATTACAATTGTTAACAAGCTGCAAGATGCG
TTCACATCGCTCGGCGTCCACATGCAACTGGATCTGCCGCAGATCGCGGT
GGTCGGTGGCCAGTCAGCTGGCAAGAGTTCCGTTTTGGAGAACTTTGTGG
GCAAAGATTTCTTGCCGCGCGGCTCTGGTATCGTAACTCGGAGACCACTA
ATCTTGCAACTGATCAATGGAGTTACCGAATATGGCGAGTTCCTTCACAT
TAAAGGCAAGAAGTTTTCCAGCTTCGATGAGATCAGAAAAGAAATCGAAG
ATGAAACGGATCGTGTGACCGGTAGTAACAAAGGCATTTCAAACATTCCA
ATTAATTTGCGCGTCTACTCGCCGCACGTACTCAATTTAACCCTGATCGA
TTTGCCAGGCCTGACAAAGGTGGCCATTGGCGATCAACCGGTGGATATTG
AGCAGCAAATTAAGCAGATGATATTCCAATTTATTCGCAAAGAGACTTGT
TTAATTTTGGCTGTGACCCCGGCCAATACGGATCTGGCCAATTCGGATGC
CCTCAAGCTGGCCAAGGAGGTGGATCCACAGGGTGTGCGAACCATTGGCG
TTATAACCAAGCTGGATCTGATGGACGAGGGCACCGATGCACGCGACATT
CTGGAGAATAAGCTGCTTCCGCTGCGACGTGGCTATATTGGCGTGGTGAA
TAGATCCCAAAAGGATATCGAGGGGCGCAAGGATATCCACCAGGCATTGG
CCGCCGAACGCAAGTTCTTCTTGAGCCATCCCTCCTATCGGCACATGGCC
GACCGTCTCGGCACCCCCTACTTGCAGCGCGTGCTCAACCAACAACTAAC
CAATCACATCAGGACACGTTACCTGGCCTGCGGGATAAGTTGCAGAGCAG
ATGCTCACTTTGGAGAAGAGTGAGGAGTTTAGCACTTTCAGCCAGCGATG
CTAGCATCAAACAAAAGCTATGCTCCAATGATTCAGCAGCTGCATCAGAC
TTTGAGCGACTATCGAGGGCCAGCGCTCAGCTTGTGACACAACGAGCCTC
TCAGGTGCCGCCAGATCATCGCATTTCCATGACGTCTGGGCCTTTGGAAT
CGTAAGATGCCTGCCGATGAAGGACTTGGCCACGAGAGATCTCATGCAT
UFO08459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shi-RO | 4768 | CG18102-RO | 396..1551 | 9..1145 | 4995 | 96.8 | Plus |
| shi-RN | 3712 | CG18102-RN | 230..1385 | 9..1145 | 4995 | 96.8 | Plus |
| shi-RM | 4198 | CG18102-RM | 419..1574 | 9..1145 | 4995 | 96.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15894834..15895591 | 228..977 | 3420 | 98.3 | Plus |
| X | 23542271 | X | 15893005..15893150 | 9..154 | 730 | 100 | Plus |
| X | 23542271 | X | 15894693..15894766 | 155..228 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:19 has no hits.
UFO08459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:58 Download gff for
UFO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RB | 412..1429 | 1..1009 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:56 Download gff for
UFO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RM | 410..1427 | 1..1009 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:22 Download gff for
UFO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RM | 412..1429 | 1..1009 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:22 Download gff for
UFO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15892998..15893150 | 1..154 | 97 | -> | Plus |
| X | 15894693..15894766 | 155..228 | 100 | -> | Plus |
| X | 15894835..15895591 | 229..976 | 98 | -> | Plus |
| X | 15895662..15895695 | 977..1009 | 97 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:56 Download gff for
UFO08459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15787031..15787183 | 1..154 | 97 | -> | Plus |
| arm_X | 15788726..15788799 | 155..228 | 100 | -> | Plus |
| arm_X | 15788868..15789624 | 229..976 | 98 | -> | Plus |
| arm_X | 15789695..15789728 | 977..1009 | 97 | == | Plus |
