UFO08460.5prime Sequence
1133 bp (1029 high quality bases) assembled on 2011-07-29
> UFO08460.5prime
CAGTCGACATGGACGACGAGTTTAAGCTGTGCTGGAAGAACTTCCAGGAC
AACATAGCCAGCGGCTTCCAGAATTTGTACGACCGCGGCGACCTGGTGGA
CGTGACCCTCGCCTGCGATGGAAAGCTCCTCCATGCCCACAAGATAGTGC
TGGCTATCTGCAGCCCCTACTTCCAGGAGATATTCACTACCAATCCCTGC
AAGCATCCCATCATAATACTCAAGGATGTGAGTTTCAACATTATGATGGA
GCTACTGGAGTTTATGTACCAAGGAGTGGTTAATGTTAAGCACACGGAGT
TGCAGTCGTTCATGAAAATTGGACAGCTGCTGCAGATCAAGGGCTTGGCT
ACCAATTCGAATTCCTCGCCAGGATCGAGTGTCTCGGAGAAGTCCTCTAG
TCAGCCACCGGCAGAAGAATCAAGCAACACCAACAGCACCAATCATCACA
ACTCTAGCACTAATAGCAATAACAATAGCAAATCGGAAACGGATCACAAT
GAGTCCAAAGGCCAGAGCAATTCAAGAACCACTTCGCCAGGTGGTGCCAG
CAGAGCCTCCAACGATGCCAGCCACCTGTACACATCGAACAAACGTCCGA
TGCCGTCGGATTTTGGCAGCGATTCCCTGTCCATTTACTCCGGCAAGCAG
TTGAGACGCTCCCTCAAGGATCACGGTTCCGGCGGAAGCGAAGGCGGCGG
AGGCGATCACGCGGATACCGCAGCCGGATTGGACAACAGCATGAATTCAG
AGGAGTTCTTCTTGCCACCCATTCCACAAATCACGATGGGAGAACAGCGC
TACGATCTCGGAGGTCTGAAACGGGAATCGGATGGTCACCACCACGGTCC
CTTGTCGGCTGGCGGAGGAAATTCGGGCAGCGTTGGCAGCCTCACCTCCT
CGGCCTCACCGTCTGCACCCATCCGTAATCCCTTTGCCCGAACTTCATGG
ACAGCTTCAACTACTACAAGGCGCACAGCAGTGTCCCAGCGTAGTCCATA
ACTCGTGGCCAGTGCGTCATACATGCTCCGTGGCCTGCTCCGGCGCGAGT
ACCCACGACTGTATGCCACGAATACTCAGAGCTTGCCACCCATGACATTC
CTACGCAGCCATGGTATGTCTGTCAACTCCTTC
UFO08460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG34376-RB | 2357 | CG34376-RB | 318..1384 | 9..1054 | 4830 | 98 | Plus |
| CG34376-RA | 2550 | CG34376-RA | 318..1384 | 9..1054 | 4830 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22456551..22457309 | 214..971 | 3745 | 99.9 | Plus |
| 3R | 32079331 | 3R | 22448416..22448620 | 9..213 | 1025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:22 has no hits.
UFO08460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:59 Download gff for
UFO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RB | 369..1369 | 1..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:58 Download gff for
UFO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RA | 310..1310 | 1..995 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:23 Download gff for
UFO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG34376-RA | 310..1310 | 1..995 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:23 Download gff for
UFO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22448408..22448620 | 1..213 | 98 | -> | Plus |
| 3R | 22456551..22457338 | 214..995 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:58 Download gff for
UFO08460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18274130..18274342 | 1..213 | 98 | -> | Plus |
| arm_3R | 18282273..18283060 | 214..995 | 99 | | Plus |
