UFO08462.5prime Sequence
1112 bp (987 high quality bases) assembled on 2011-07-29
> UFO08462.5prime
CAGTCGACATGAATATAATTTCGCGCAGCATACGTACAGGCGCCTTGGCC
CCGCCCATCACTGCCCACGCCTCCGCCAACGCCAACGCCAGCGGGCTCAG
GAAAAGCAGCCAGCGACGCAACCGTGCTCCGCTTCAAATGAATTGCCCCA
TTCTGATTGTAATTAGCCTCGGATGGCTGCTGCACGCGCACGCCGGAAGC
GGCGGGTTCGCCGTCGAGGCCGCCATTTCAAATCGAGGCAGCAACAGCCG
CTCGATGAGCAACGTGCAACAGTCGGCGGTGGCCGCCTCCACGCTGACCG
CCACCCTGCCCCGTTTCCTCTCCAGAGGACACACCTACCGCGCCGTCGTC
GGGGACACGCTGGTCCTGCCCTGCCAGGTGGAGAATCTGGGCAATTTCGT
CCTTCTGTGGCGACGGGGAACAAATGTGCTCACTGCCTCCAACATTATGG
TTACAAGGGATGAGCGCGTAAGACTGATAGATGGTTATAATTTAGAGATA
TCCGATTTGGAGCCTCAAGACGCCGGGGATTATGTTTGTCAAATCAGTGA
CAAAATAAATCGTGATCAAGTGCACACAGTTGAGATATTGGTTCCGCCCA
GTGTACGGGCCATCCCAACATCCGGACAACTGCAGGCCCGCAAAGGAGGA
CCCATTACGTTGGAGTGCAAGGGATCTGGTAATCCGGTGCCATCCATTTA
CTGGACCAAGAAGAGCGGCGCAAACAAGTCAACGGCCAGGATCGGAGACG
GACCCATTTTGACACTGGAGAAGCTGGAGCGACAGCAGGCGGGAGTCTAC
CAGTGCACCGCCGACAACGGAGTGGGTGACCCGGTCACAGTGGATATGCG
ACTGGATGTGTTGTATCCCCCGGATATACAAGTGGAGAAATCCTGGATAC
ACTCGGCGAAGGATTCGAGGCGAAGCTCGTTTGCATTGTTTTCGCTGATC
CAGTCGCACGGTGTCCTGTACCAAAACTCATTTCCGATCATCGACGACAG
CGCATCATGCCACAGAGCACGGCCATGCTCACATCGCCACATCAGCAGAG
ACTTGCAACTACAGCTGCTTGCGACAATCGCTGGACCGTCCGGCATCTGA
ACTTCGAAGCCC
UFO08462.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| klg-RA | 4052 | CG6669-RA | 785..1895 | 9..1095 | 4940 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22915408..22915637 | 9..238 | 1150 | 100 | Plus |
| 3R | 32079331 | 3R | 22953000..22953201 | 390..591 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 22948675..22948830 | 236..391 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 22955750..22955902 | 712..864 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 22953346..22953468 | 591..713 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 22956590..22956684 | 865..958 | 425 | 98.9 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:25:09 has no hits.
UFO08462.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:43 Download gff for
UFO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klg-RA | 767..1750 | 9..989 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:12 Download gff for
UFO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klg-RA | 785..1768 | 9..989 | 99 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:40 Download gff for
UFO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| klg-RA | 785..1768 | 9..989 | 99 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:40 Download gff for
UFO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22956590..22956687 | 865..960 | 97 | -> | Plus |
| 3R | 22957288..22957317 | 961..989 | 96 | == | Plus |
| 3R | 22915408..22915636 | 9..237 | 100 | -> | Plus |
| 3R | 22948677..22948829 | 238..390 | 100 | -> | Plus |
| 3R | 22953001..22953201 | 391..591 | 100 | -> | Plus |
| 3R | 22953347..22953468 | 592..713 | 100 | -> | Plus |
| 3R | 22955752..22955902 | 714..864 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:12 Download gff for
UFO08462.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18782312..18782409 | 865..960 | 97 | -> | Plus |
| arm_3R | 18783010..18783039 | 961..989 | 96 | == | Plus |
| arm_3R | 18741130..18741358 | 9..237 | 100 | -> | Plus |
| arm_3R | 18774399..18774551 | 238..390 | 100 | -> | Plus |
| arm_3R | 18778723..18778923 | 391..591 | 100 | -> | Plus |
| arm_3R | 18779069..18779190 | 592..713 | 100 | -> | Plus |
| arm_3R | 18781474..18781624 | 714..864 | 100 | -> | Plus |
