UFO08466.5prime Sequence
1121 bp (1022 high quality bases) assembled on 2011-07-29
> UFO08466.5prime
CAGTCGACATGAACAGCAATACAGATCTCCATCATTCAGATGATCAGGAC
TTTTCGGAATTTCTCAATGAGTATTATCTGCAAAGCAATTCCCAAAGTAT
CGAACCTGAAGCAAGTTACGAAGATGGAGAAATGGAAGCAGAGTGGCTAG
TTTCTGCTGGTTATCCAGAATTGACAAAACCGTTTGAACAAGGGTTAGAG
GTTTCTAAAAAGGACTTGGAACCCATACTGACTACTTTATCGAAGCCCCA
TGCTGAAGCGATTGTACAACTAGTAAGGACTTTAAACAAAACAGTACGGG
TGCGCACAAAAAGTCGGCCAAAACGGAAACCTGATATAAGGGATGTATTT
CGCGAATTTGATGAACAAGGGACAGTTACACGCTCACGAAGTGCCACTCC
GGATTCCCTGGACTCTTTACAAATCGATGAAGCTTGGACCAACAATTCTT
TACCGACTTTTGTAAATGTATATGAAAAAAATACCGAAACTGCCATACAA
TGTGTAGAACAATCAAACGAAATATATTTAAAACAAAACCTGCGACGAAC
CCCTAGCGCCCCGCCTAAAAGCGGCACCTATGCGGATATATTTCGTGGTT
CGCAAGTGCGATGTGATATACCTTTGTACTCGGCGGATGGTGTAGAATTG
CTTGGATATTCACGGATTGGCACCATACAATTTCCTCGGAACCGATCCGT
CTCTGATCCATTTTGTTCTATTGGTCGATCAAAGGAGTCAAGAAGTGAAA
ATGATGCACGATCACAAAAGAAAAAATCGAGTGAAGTGCTGTCAGCCTCA
GAGAATGAATGCGGTCGCCTTTTACCGATGCCCTACAATGTCCTGAGCTT
TGAAAGTATTTGTCGAGATTCTTCTAGTCTTGATAGCTGCGAAGTCCTAG
ATACCTGTGATATCCCTTCACGCTATTCACAGATGTCGTATATAGCGAAC
TGACATGAAACGTTTACAGACAATACTTTGGTAGAGTAGCACATATTTGA
TCGCACAAAGTTCTTAGATAAAGAACTTTTAGCGTCGTCGCAGGAAGTAA
TCTTTTGGGTATCTTAACGCTTTATCGTCGATCAGCAGGTTACGACTGAC
ACTGGTCAAATTGGAGGCTTA
UFO08466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| conu-RI | 2070 | CG17082-RI | 84..1198 | 9..1093 | 4875 | 97.1 | Plus |
| conu-RG | 2098 | CG17082-RG | 112..1226 | 9..1093 | 4875 | 97.1 | Plus |
| conu-RA | 2210 | CG17082-RA | 224..1338 | 9..1093 | 4875 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4756316..4756588 | 452..724 | 1365 | 100 | Plus |
| 2R | 25286936 | 2R | 4756654..4756917 | 724..982 | 1110 | 97.3 | Plus |
| 2R | 25286936 | 2R | 4754500..4754671 | 192..363 | 860 | 100 | Plus |
| 2R | 25286936 | 2R | 4749272..4749386 | 9..123 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 4756171..4756259 | 363..451 | 445 | 100 | Plus |
| 2R | 25286936 | 2R | 4749444..4749514 | 122..192 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:25 has no hits.
UFO08466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:00 Download gff for
UFO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17082-RD | 122..1177 | 9..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:00 Download gff for
UFO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17082-RD | 105..1160 | 9..1050 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:25 Download gff for
UFO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| conu-RA | 224..1279 | 9..1050 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:25 Download gff for
UFO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4754500..4754670 | 192..362 | 100 | -> | Plus |
| 2R | 4756171..4756259 | 363..451 | 100 | -> | Plus |
| 2R | 4756316..4756588 | 452..724 | 100 | -> | Plus |
| 2R | 4756655..4756994 | 725..1050 | 94 | | Plus |
| 2R | 4749446..4749513 | 124..191 | 100 | -> | Plus |
| 2R | 4749272..4749386 | 9..123 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:00 Download gff for
UFO08466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 636777..636891 | 9..123 | 100 | -> | Plus |
| arm_2R | 636951..637018 | 124..191 | 100 | -> | Plus |
| arm_2R | 642005..642175 | 192..362 | 100 | -> | Plus |
| arm_2R | 643676..643764 | 363..451 | 100 | -> | Plus |
| arm_2R | 643821..644093 | 452..724 | 100 | -> | Plus |
| arm_2R | 644160..644499 | 725..1050 | 94 | | Plus |
