UFO08469.5prime Sequence
1115 bp (1013 high quality bases) assembled on 2011-07-29
> UFO08469.5prime
CAGTCGACATGCTCTCGCTGCTGCCGCACCACCCGCTCGTCTGCCGCTGC
TGCCTGCTGGAGCAGCCGCCGCTCTACCACAGTCTCTATGACGCCTCTAG
CCAGCTGGCGGTGGAGCTGAAGGCCCTGGCTCCCGCCCTGCGCCTTGAGC
ACGGCGACAACCTCACCGATGTGATATGCGACCTGTGCCTTCGTCGCCTG
CACGACGCCCGCGACTTCCAGCGGCGGTGCGAGCACTCCGAACAGGTGCT
ACGCATGCGGCACGAGCACTGGAAGCACACGGTGGCCGTGGGAGACGCCT
TGGCCCTGGACGATGTGCTTGAGTGCCTGGAGCGAGAAGTGGGCAGCCTG
GAGGGACCGATGTCTGTGCCTCTGCAAGCAAGTAAGCCGGTGGCCCATGT
GGCGCCCTTAATGGAGACCGTTGATTTTGAAAGCCTGGACTTCCAAGACA
GCTCGCACAGTGAACATGATATTCCCTCGTACTGGGAATCGTCGGTAGAT
TCGGGAAGCCTAAACACTCCGCATCATCAGCCGGAGACCGCCGAGCTCTT
TGCAGTCGAGCCCCCAACGCCGCCGGAATCATCCGAAGAGCCGGCACCTG
ATGCCGCAGAAAAGCCCAAGATGCGGAGAGCCAGGCCGCGCCAGGATAAC
GTCAAGCCCAAGGAGAGGAAGGCCTCTGGTGCCGTGCACCCGCGATCCTT
GCACCCGTGCCCCGAGTGCGAAAAGAAGTTCACTCGCAACTTTCAGCTGA
AGCTGCACATGACAGCCGTTCACGGCATGGGCGAGATGAGGTACCAGTGC
GAGGAGTGCCGCAAGAACTTTGCCTCGCGGCACAGTCTTCGCTACCACGT
GAAGTCAGTGCACTCAACGGAGCGTCCATTCGGCTGCCAGCACTGCGACG
CCGCTTCATCTGCGCACGCAGCTGCTGTCCCACCTGCGCACCCACACGGC
GAGCCAGCGCGCATATTCGAGTGCAGCGCTGCTCGAGAGCTGGCCCACAA
GTCCGACCTCCGCACCATATGCGCCTCCACACCCACATGGGAGCGGCCGT
CAAGGTGCGATCGCTGCTCGAAGCCTTCTTCACTCGTGCACCTCACTCCA
ACCTCTGGTGCACCG
UFO08469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30431-RA | 1849 | CG30431-RA | 223..1344 | 9..1113 | 5040 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6204018..6204690 | 429..1088 | 2605 | 96.3 | Plus |
| 2R | 25286936 | 2R | 6202947..6203367 | 9..429 | 2105 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:26:31 has no hits.
UFO08469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:01 Download gff for
UFO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 199..1326 | 2..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:04 Download gff for
UFO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 217..1344 | 2..1113 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:28 Download gff for
UFO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30431-RA | 217..1344 | 2..1113 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:28 Download gff for
UFO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6202941..6203367 | 2..429 | 99 | -> | Plus |
| 2R | 6204019..6204719 | 430..1113 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:04 Download gff for
UFO08469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2090446..2090872 | 2..429 | 99 | -> | Plus |
| arm_2R | 2091524..2092224 | 430..1113 | 96 | | Plus |
