UFO08470.5prime Sequence
1097 bp (996 high quality bases) assembled on 2011-07-29
> UFO08470.5prime
CAGTCGACATGAGGTCGTCTAGGACAGCCAGCGATTCAAAATGGGTGCGC
CAGTCAAACGACAACAAAGACACAATGCGCTCCTCGCGGCAGGTTAACAA
AAAGCTTGTGAAGCTATTCCTGGCGGAGGCAGACGACAGTGACGCCACCT
GCACCACATCCACTGCCCTGGACACGACCACAGCAGACAGTGCGTTTTTT
GATAGTGATTTCGAAGAGGAGAGCACTGGGCTCCAGGAATGCGATCCCCC
GCCGGCAAGCAAGTGCCGCACCTGCTTTCGCATCATATCGCGGCATGAGG
ATGCTCAGGATCTATATGACAGGGTCAACATAGCGCTTCTGCACCACATA
AAGGTCATCACTGGGGTGTGGATACAACAAGGAGTCAAAGAGCTACCGCA
TCACATTTGCTCAACGTGCCAGGAAACTGTGAATAAATCCATGGAATTCC
GTGCCAAATGCCAGCAGGTCGACAAAAAGCTTAGGCAGACGACGGAAAAG
TACAACATTCAAATCTGTGACGAGGAAATGGAGTCGGAGCTGGAAAATGT
GCTCTACGAAGAGTCCGCCCAGCAGGCAAAGGGAGTCGTAGGACTAGAAG
ATTTCAGCTCAGAGTTGTTGCCGGATAGTGAGGGTGTCCTGGATGAAGAC
GACTTTCCACTGGATGCAGAGCCAACTCAGTTTTCACTAAGTGAAGATGA
GTTGGATCTAGACAGAGACACAGAAAAAGACTTTGCTTTGGAGCAAAACA
AGTCATGTAATGAAATAATTAGCATACGAAAGTGTAAGACTAAGAAGAGA
TTGGTAAGGTAGATCACGGAGCCAAGGTCTATAAGTTGTGCTCGGTGAGT
ACAATAGCCTAAAGGAAACTGCACCAAAGTATTCGCTTTCACTACCAAAG
AACCTCAACTAATGGTGAGTCCAGAGAGAAAACCGAAGCGCGCGAAGATA
CAAGCGAAGCCATTGAACTATGTCTGCGAACAAGTGCGCACACTTTCGCA
ACGCAGTCAGCTGCAGATGCACTTGCTCGTCACAATAAGGCAGATTCGAG
TGCCGATGCCGAAGAATTCTACGATTCCTAATACGCGCAACATTCCC
UFO08470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17803-RB | 2238 | CG17803-RB | 352..1459 | 9..1095 | 4915 | 97.4 | Plus |
| CG17803-RA | 2019 | CG17803-RA | 133..1240 | 9..1095 | 4915 | 97.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 17799841..17800524 | 1041..371 | 2750 | 96.5 | Minus |
| 3R | 32079331 | 3R | 17800720..17801051 | 375..44 | 1645 | 99.7 | Minus |
| 3R | 32079331 | 3R | 17801111..17801161 | 59..9 | 210 | 94.1 | Minus |
Blast to na_te.dros performed 2014-11-26 17:26:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Doc2-element | 4789 | Doc2-element DOC2 4789bp | 2843..2933 | 713..806 | 184 | 68.1 | Plus |
| Rt1b | 5171 | Rt1b RT1B 5150bp | 3166..3218 | 610..558 | 121 | 69.8 | Minus |
UFO08470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:02 Download gff for
UFO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17803-RA | 128..1164 | 1..1028 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:07 Download gff for
UFO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17803-RA | 128..1164 | 1..1028 | 98 | == | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:30 Download gff for
UFO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17803-RA | 128..1164 | 1..1028 | 98 | == | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:30 Download gff for
UFO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 17799855..17800523 | 372..1028 | 97 | <- | Minus |
| 3R | 17800724..17801050 | 45..371 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:07 Download gff for
UFO08470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13625577..13626245 | 372..1028 | 97 | <- | Minus |
| arm_3R | 13626446..13626772 | 45..371 | 100 | <- | Minus |
