UFO08471.5prime Sequence
1109 bp (962 high quality bases) assembled on 2011-07-29
> UFO08471.5prime
CAGTCGACATGCACATCTCCCAGAGGCGCTGCCTTTATCCGATCTTTCTA
TTCCTGCTGGCCTTTGTTGGCACAGCACTCGGTAGAGTCCAGGAAGTGCA
CAATGTGTTGGAGTTGACGGGTCAGAAAGCCAGCAAGCTGAGGTTCTCCA
CGGACGTGGCCACGGGCAAGTACACTCCGCCGGAGGAGATGGATCCCCAG
TTCTGGTACAAGCTCGCCGACGAGGAGATCGCCAAAAGGCTTCAGCTACC
ACAGCCCAACTCCGACAGGGCCAAAAACGTGATAATGTTCCTCGGGGATG
GTATGCCAATTAGCACAGTCACAGCTGCTCGCATCCTGAAAGGACAACGC
CAAGGAAACACTGGGGAGGAGTCCTCACTGAGCTTCGAGAAATTCCCCTA
TTCGGGATTGAGCAGAACCTACTGCGCCAACGCCCAGGTTCCCGACTCAG
CCTGTACTGCTACCGCTTATCTGTGCGGCGTTAAAACCAACATTATTAAT
ATCGGAGTAAGTGCAGCAGTAAACTTTAACAACTGCACCGCCAGCCAGGA
TCCCGCGAACCGCCTGACCTCCATTGCGGAATGGGCCCAGAATGCCGGCA
AGTCCACGGGATTTGTGACCACCACCACACTGACCCATGCCAGTCCCTCT
GGAGCATATGCCAAGACGGCCAATCGAATGTGGCAAAGCGACACGGATGT
GACCAGCTATGGAGTGGATGCCAGCACCTGCGTCGACATGGCCACTCAAC
TGGTGACCCAGACGCCCGGCAAGAACTTCGAGGTCATGTTCGGCGGCGGA
ATGGGCAAGTTCCTTCCCAAACCACGAAAGATAGTCACGGGAAATATGGC
GAGCGATCCGATGGCGTGAATCTGCTGTCCCGGTGGCAAAGGCTCCACGA
TAAAGTGTCTTGATCACCAATCGCAAGCAGCTGCTTAACTTAGACGTTTC
AGCTGCATCAGCATAATGTACCTCCAATCGGCTGATGACTTCACATGACG
CTGATCCCACTATCAGCCCACTCTCTCGACCTCACCGAGGTGCATCAGAG
CTCAGCCCATGAAATTGATCTTGTGTTCATAGAGGTTGCCCATGACTACG
CACACTAAC
UFO08471.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3290-RA | 1762 | CG3290-RA | 19..1117 | 9..1085 | 4890 | 97.5 | Plus |
| CG3264-RB | 2182 | CG3264-RB | 83..971 | 52..938 | 2295 | 84.2 | Plus |
| CG3264-RA | 1737 | CG3264-RA | 83..971 | 52..938 | 2295 | 84.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22206865..22207409 | 959..417 | 2580 | 99.1 | Minus |
| 2R | 25286936 | 2R | 22207562..22207969 | 416..9 | 2040 | 100 | Minus |
| 2R | 25286936 | 2R | 22209733..22210256 | 938..417 | 1410 | 85.5 | Minus |
| 2R | 25286936 | 2R | 22210320..22210683 | 415..52 | 845 | 82.1 | Minus |
| 2R | 25286936 | 2R | 22204593..22205002 | 820..420 | 500 | 75.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:26:37 has no hits.
UFO08471.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:03 Download gff for
UFO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 9..1135 | 1..1100 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:09 Download gff for
UFO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 9..1135 | 1..1100 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:32 Download gff for
UFO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3290-RA | 9..1135 | 1..1100 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:32 Download gff for
UFO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22206719..22207409 | 417..1085 | 96 | <- | Minus |
| 2R | 22207562..22207979 | 1..416 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:09 Download gff for
UFO08471.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18094224..18094914 | 417..1085 | 96 | <- | Minus |
| arm_2R | 18095067..18095484 | 1..416 | 99 | | Minus |
