UFO08480.5prime Sequence
1127 bp (1019 high quality bases) assembled on 2011-07-29
> UFO08480.5prime
CAGTCGACATGGTCAAGAAGACATCCGCCAGCCTGGGAAAGAGCATCTTG
CTGGGAGTTCTGTTGTTTCTCGCCGTACACGCACTTCTCACCGAGGCGGC
CCCCTTCCAGGAGCTGGAGCCTCGCAAAGGTCATGTGCCCGTCTACATCC
GACATGGCGATGAGCCACTCAGCGAAATCCATCCAGGACTGGCCGAGGCC
TTCAAGGAGGGCGAATCGAAGAGTCTCGTCACCGAATCTCCCCAGGCGGA
AACTACAAACCCACCAACCACATCCGATGCTCCCGCTCCCGCTCCGTCCA
GCTCCACGGTATCGGATATAGCCAGCTTTGAGGCCATCAAAGGAAAGACG
GATGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAAGTGG
TCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGGAGAT
CCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCGGCGG
CAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGGTCATTACTGG
ATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCGCCC
TGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGACATG
GAAGCCATCACAAACGGCATGATGAACCTGAATCGCCAGCGGCATCAGCA
CCTTGTCGCCTTGCGTATAATATTTGCCCATGGTGAAAACGGGGGCGAAG
AAGTTGTCCATATTGGCCACGTTTAAATCAAAACTGGTGAAACTCACCCA
GGGATTGGCTGAGACGAAAAACATATTCTCAATAAACCCTTTAGGGAAAT
AGGCCAGGTTTTCACCGTAACACGCCACATCTTGCGAATATATGTGTAGA
AACTGCCGGAATCGTCGTGTATCACTCAGAGCGATGAAACGTTTCAGTTT
GCTCATGGAAAACGGTGTAACAAGGTGACACTATCCATATCACCAGCTCA
CGTCTTTCATGCATACGAAATCAGATGACATCATCAGGCGGCCAGATGTG
AATCGCGATAAACTTGGTGCTATTTTCTTACGGTCTTGAAGCGTAATCAC
TGAACGGCTGATAAGGTACTGACACTG
UFO08480.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:26:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14984-RC | 709 | CG14984-RC | 202..547 | 8..353 | 1730 | 100 | Plus |
| CG14984-RB | 579 | CG14984-RB | 72..417 | 8..353 | 1730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:26:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3951355..3951492 | 353..216 | 675 | 99.3 | Minus |
| 3L | 28110227 | 3L | 3951752..3951877 | 221..96 | 630 | 100 | Minus |
| 3L | 28110227 | 3L | 3952261..3952349 | 96..8 | 445 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:26:51 has no hits.
UFO08480.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:12:06 Download gff for
UFO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14984-RB | 65..421 | 1..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:32:20 Download gff for
UFO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14984-RB | 65..421 | 1..358 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 18:00:41 Download gff for
UFO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14984-RB | 65..421 | 1..358 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 18:00:41 Download gff for
UFO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3951355..3951486 | 222..353 | 100 | <- | Minus |
| 3L | 3951752..3951876 | 97..221 | 100 | <- | Minus |
| 3L | 3952261..3952352 | 1..96 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:32:20 Download gff for
UFO08480.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3951355..3951486 | 222..353 | 100 | <- | Minus |
| arm_3L | 3951752..3951876 | 97..221 | 100 | <- | Minus |
| arm_3L | 3952261..3952352 | 1..96 | 95 | | Minus |
