UFO08484.5prime Sequence
1094 bp (959 high quality bases) assembled on 2011-07-29
> UFO08484.5prime
CAGTCGACATGCCTAACTGGAATCAAATACAGTCCCAACTGAGAAGCTCC
AACAATCCCGTCGTTTTCTTCGACATTGCCGTAGGCACAACGGAAATCGG
ACGAATGATATTCGAACTCTTTGCGGACACAGTGCCCCGCACGGCGGAAA
ACTTCCGGCAGTTCTGCACGGGCGAGTACCGACCGGATGGCGTTCCCATT
GGCTACAAAGGCGCCAGTTTCCATCGGGTGATCAAGGACTTCATGATCCA
GGGCGGCGACTTTGTGCAGGGCGACGGCACCGGCGTGACCAGCATATACG
GCAACACCTTCGGCGACGAGAACTTTACCCTGAAGCACGACTCGCCCGGC
CTCCTTTCCATGGCAAACAGTGGCAAGGAGACGAACGGCTGCCAATTCTT
TATCACCTGCGCCAAGTGCAACTTTTTAGACGGAAAGCACGTGGTGTTCG
GTCGGGTTCTGGATGGACTGCTCATCATGCGCAAGATCGAGAACGTGCCC
ACGGGCCCCAATAACAAGCCGAAGCTCCCAGTGACCATTTCGCAGTGCGG
GCAAATGGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCCAGGTAA
GTGGTCATAATCATAATCATAATCATAATCATAATCACAACTAGCCTAGG
AGATCCTGGTCATGACTAGTGCTTGGATTCTCACCAATAAAAAACGCCCG
GCGGCAACCGAGCGTTCTGAACAAATCCAGATGGAGTTCTGAGTCATTAC
TGGATCTATCAACAGGAGTCCAAGCGAGCTCGATATCAAATTACGCCCCG
CCCTGCCACTCATCGCAGTACTGTTGTAATTCATTAAGCATTCTGCCGAC
ATGGAAGCCATCACAAACGGCATGATGAACCTGATCGCCAGCCGCATCAG
CACCTTGTCGCCTTGCGTATATTATTTGCCCATGGTGAAACGGGGGCGAA
GAAGTTGTCCATATTGCCCCGTTTAAATCCAAACTGTGACCCACCAGGAT
TGCCTGAAAACGAAAAACATATTCTCCATACCCTTTAGGGAAATAGCCAA
GTTTCACCGTAACACGCACACTTGCCGAATTATGTGTGAACTGC
UFO08484.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17266-RB | 712 | CG17266-RB | 116..664 | 9..557 | 2745 | 100 | Plus |
| CG17266-RA | 908 | CG17266-RA | 312..860 | 9..557 | 2745 | 100 | Plus |
| CG2852-RD | 1177 | CG2852-RD | 287..493 | 201..407 | 240 | 76.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6675076..6675541 | 557..92 | 2330 | 100 | Minus |
| 2R | 25286936 | 2R | 6675606..6675690 | 93..9 | 425 | 100 | Minus |
| 2R | 25286936 | 2R | 22645330..22645535 | 407..202 | 220 | 73.8 | Minus |
Blast to na_te.dros performed on 2014-11-26 17:25:13 has no hits.
UFO08484.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:44 Download gff for
UFO08484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17266-RA | 271..823 | 9..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:15 Download gff for
UFO08484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17266-RA | 312..864 | 9..563 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:43 Download gff for
UFO08484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17266-RA | 312..864 | 9..563 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:43 Download gff for
UFO08484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6675072..6675540 | 93..563 | 99 | <- | Minus |
| 2R | 6675607..6675690 | 9..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:15 Download gff for
UFO08484.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2562577..2563045 | 93..563 | 99 | <- | Minus |
| arm_2R | 2563112..2563195 | 9..92 | 100 | | Minus |
