UFO08489.5prime Sequence
1118 bp (1014 high quality bases) assembled on 2011-07-29
> UFO08489.5prime
CAGTCGACATGGATATCCTGGACATCGATGAGGCACTAAAGGATGATTCA
TATATATTTCTGGCGGATAAGACCCACGACGATGTCTCCAACATATTGCA
GCAGTGGAAGACGAACAATCAGCCGCCGTTGCAGCAATTGCACTTGCAGT
ACAACAACGAGGCCTTCAAAAACAATTCGAAAACCTTTACTCGCCCAAAG
CGTCGGAATCTGGATTTCAGCCAAAATGGAGCGGGAAATGACAGCGGTGT
TGGAACCGGGTCGGTCGCGGGTGCCCCAGCAATGCTTCAGCTGGAAATTG
GCGGTCTTGTCACGACGAATATGCACAAATCCTTCCTGCAAGACACCTCA
CCGCCGTCTTCCATCTGCTCCTCCATGAACACTGAACGGATGAACAACTC
GCTAATCACCTCAGCAGACTTTACGAACTTGAACTTCCTTCAATCCACAA
TTGGTCTTGAGCAGGATCCAAACCTTACCACTACGCTTACCAACCAGACA
ACTGATAACATGGGAATCGGCGGCAGCATAGGCGGATATACGCTCAGTGA
CATGATCCGGGATCGCAAGGCGCTGGAGTCGCTGACCATGTGTGAGGACG
ATGGGACTCTTATCAAAGACTCGCACATCGGGCAAATTGACGAAATATCG
TTGACACTGAGCAAAACTGCTTCCGGCTGCAGCACAATGGACAACAGCAC
AGACAGTATGTCCATTCCCCTGGCCGCAGATCGAACGATGCCCGTTGTGG
TATCGGCAGTTTGTCCTGCCCTACAGCGTACCATGATTTTACGGGAGGAG
ATGATCGGCGACACAACTTTTAACCTCGTGGATAGCCTTACAACTTCTGC
GCTGCAATCAGAGTCTGAGTCTCTGCCAGTCGATGGAAATGCGACATTCA
AAAGACCCACTGCGAGTGCTACTACAGCGGACGAAACCCAGTGCTAACAG
TAGCAGATGATACTACCTTCACCGACGTTGCACACTCCTGAGGCGCTGTG
AACGCCTGAAATATGAACAGGAGCTGGCTGCTCACCATGGATTCTCCACA
CCACTACAACAACAATGGCGCTCAACTGCCTACCGATTACACATATTACA
GGCAGATACCCTACCGTT
UFO08489.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:25:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ssp2-RC | 4496 | CG9028-RC | 141..1229 | 6..1079 | 4955 | 97.9 | Plus |
| ssp2-RA | 3435 | CG9028-RA | 141..1229 | 6..1079 | 4955 | 97.9 | Plus |
| Nxf3-RC | 7512 | CG32135-RC | 3313..4245 | 162..1079 | 4175 | 97.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 17:25:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13968761..13969523 | 219..977 | 3605 | 99.1 | Plus |
| 3L | 28110227 | 3L | 13965524..13965630 | 56..162 | 535 | 100 | Plus |
| 3L | 28110227 | 3L | 13968646..13968702 | 162..218 | 285 | 100 | Plus |
| 3L | 28110227 | 3L | 13965343..13965392 | 6..55 | 250 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 17:25:30 has no hits.
UFO08489.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-21 12:11:48 Download gff for
UFO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp2-RA | 134..1227 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:31:25 Download gff for
UFO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp2-RA | 136..1229 | 1..1079 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:59:51 Download gff for
UFO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ssp2-RA | 136..1229 | 1..1079 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:59:51 Download gff for
UFO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13965338..13965392 | 1..55 | 94 | -> | Plus |
| 3L | 13965524..13965630 | 56..162 | 100 | -> | Plus |
| 3L | 13968647..13968702 | 163..218 | 100 | -> | Plus |
| 3L | 13968761..13969636 | 219..1079 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:31:25 Download gff for
UFO08489.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13958438..13958492 | 1..55 | 94 | -> | Plus |
| arm_3L | 13958624..13958730 | 56..162 | 100 | -> | Plus |
| arm_3L | 13961747..13961802 | 163..218 | 100 | -> | Plus |
| arm_3L | 13961861..13962736 | 219..1079 | 97 | | Plus |
